Browse Element(s) Details


OsAffx.31932.2.S1_at

Description tigr:9640.m02866
TID=OsAffx.31932.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2971011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified
LOC_Os12g29720OsAffx.19888.1.S1_at11/1112+17716855..17718664hypothetical protein
LOC_Os12g29714OsAffx.30032.4.S1_at11/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.28563.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.16416.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29710OsAffx.31932.2.S1_at11/1112+17729944..17734518NB-ARC domain containing protein
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein
LOC_Os12g29730OsAffx.30032.4.S1_at11/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.28563.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.16416.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29740Os.50295.1.S1_at11/1112+17750698..17754132expressed protein
LOC_Os12g29750Os.52805.1.S1_at5/1112+17757459..17759947membrane protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31932.2.S1_at--473--5011Chr12:17730520..17730544 (25 bp)
GCAGGAACTCTCCACAGATGACTTT
LOC_Os12g29710
OsAffx.31932.2.S1_at--252--2011Chr12:17730514..17730538 (25 bp)
ACTCTCCACAGATGACTTTGCAAGG
LOC_Os12g29710
OsAffx.31932.2.S1_at--931--3271Chr12:17730445..17730469 (25 bp)
CAAATTAGACCTTCGTTGGAACGAT
LOC_Os12g29710
OsAffx.31932.2.S1_at--165--10031Chr12:17730440..17730464 (25 bp)
TAGACCTTCGTTGGAACGATGAGGT
LOC_Os12g29710
OsAffx.31932.2.S1_at--333--952Chr12:17730362..17730386 (25 bp)
AGGACCTAGAATTTTCGAGGTGCAA
LOC_Os12g29710
OsAffx.31932.2.S1_at--273--9352Chr12:17730348..17730372 (25 bp)
TCGAGGTGCAAAAAACTGCAGTCCC
LOC_Os12g29710
OsAffx.31932.2.S1_at--625--1112Chr12:17730329..17730353 (25 bp)
AGTCCCTCCCTACTGGGCTTAGTGA
LOC_Os12g29710
OsAffx.31932.2.S1_at--854--1932Chr12:17730318..17730342 (25 bp)
ACTGGGCTTAGTGAAATCCCCAACA
LOC_Os12g29710
OsAffx.31932.2.S1_at--610--4152Chr12:17730300..17730324 (25 bp)
CCCAACATCAAGACATTAGGGATCT
LOC_Os12g29710
OsAffx.31932.2.S1_at--227--151Chr12:17730286..17730310 (25 bp)
ATTAGGGATCTATGGATGTCTAGCC
LOC_Os12g29710
OsAffx.31932.2.S1_at--401--10112Chr12:17730276..17730300 (25 bp)
TATGGATGTCTAGCCATCAGCTCGC
LOC_Os12g29710
Target Sequence 
GCAGGAACTCTCCACAGATGACTTTGCAAGGGTTCTTGCTACACCTGTTTGCCATCTCCTCTCTTCCTCCCTAACCAAAT
TAGACCTTCGTTGGAACGATGAGGTGGAGTGCTTCACAAAGGAGCAAGAGAAGGCCCTTCACATTCTCACCTCCATTGAG
GACCTAGAATTTTCGAGGTGCAAAAAACTGCAGTCCCTCCCTACTGGGCTTAGTGAAATCCCCAACATCAAGACATTAGG
GATCTATGGATGTCTAGCCATCAGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31932.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis