Browse Element(s) Details


OsAffx.24866.1.S1_at

Description gb:NM_196046.1
DB_XREF= gi:37533451
TID=OsAffx.24866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0073L01.7), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2185011/11retrotransposon protein, putative, unclassified
LOC_Os01g2764010/11retrotransposon protein, putative, unclassified
LOC_Os12g297009/11retrotransposon protein, putative, unclassified
LOC_Os02g544804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21820OsAffx.29376.1.S1_x_at1/1110+10880243..10881772hypothetical protein
LOC_Os10g21830OsAffx.20387.1.S1_x_at1/1110+10889889..10891523transposon protein, putative, unclassified
LOC_Os10g21840NANA10+10891763..10894845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21850OsAffx.24866.1.S1_at11/1110+10895929..10902565retrotransposon protein, putative, unclassified
LOC_Os10g21860Os.46835.1.S1_at11/1110+10912927..10913647expressed protein
LOC_Os10g21870OsAffx.18337.1.S1_at11/1110+10914548..10914985hypothetical protein
LOC_Os10g21880OsAffx.8222.1.S1_at11/1110+10916559..10916831hypothetical protein
LOC_Os10g21890Os.28351.1.A1_a_at11/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os10g21890OsAffx.12012.1.S1_at1/1110+10920851..10924205Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24866.1.S1_at--1114--9831Chr10:10901735..10901759 (25 bp)
TACAATCAATTTACTGCCGTCCGGA
LOC_Os10g21850
OsAffx.24866.1.S1_at--44--5514Chr12:17715980..17716004 (25 bp)
GAACAAGTGCCATAGTTTGCCTTTG
LOC_Os12g29700
OsAffx.24866.1.S1_at--1083--2473Chr12:17716186..17716210 (25 bp)
AACACCGACGGAGCATACAGTAGTA
LOC_Os12g29700
OsAffx.24866.1.S1_at--135--8852Chr10:10902026..10902050 (25 bp)
TGATCAGGGATCAGACTGGCGCAGT
LOC_Os10g21850
OsAffx.24866.1.S1_at--160--1393Chr12:17716250..17716274 (25 bp)
AGACTGGCGCAGTCCTTCAGGCAGG
LOC_Os12g29700
OsAffx.24866.1.S1_at--1017--1394Chr12:17716386..17716512 (25 bp)
AGACTCAATGATGCTTCGCTACTCG
LOC_Os12g29700
OsAffx.24866.1.S1_at--800--3693Chr12:17716506..17716530 (25 bp)
CTACTCGCCCCGGAGTTGTAATAAG
LOC_Os12g29700
OsAffx.24866.1.S1_at--514--2893Chr12:17716528..17716552 (25 bp)
AAGGTGGCACATGAGCTTGCCGCGT
LOC_Os12g29700
OsAffx.24866.1.S1_at--22--5933Chr12:17716540..17716564 (25 bp)
GAGCTTGCCGCGTATGGTTGTAATC
LOC_Os12g29700
OsAffx.24866.1.S1_at--877--7915Chr12:17716555..17716579 (25 bp)
GGTTGTAATCTCCAGACCGTGTCTT
LOC_Os12g29700
OsAffx.24866.1.S1_at--351--4275Chr12:17716597..17716621 (25 bp)
CCTGGTCTGGAACGGCTGGTATCCA
LOC_Os12g29700
Target Sequence 
TACAATCAATTTACTGCCGTCCGGAAAATGAACGAACAAGTGCCATAGTTTGCCTTTGGCAGTGGTGGAAAGAGAGGAAT
GAAGAAAAAAGCCCCAGAACAGGAGAGTGTGCAGTTTGGAGACGGCCACCCCTGAACTTTGTGAAAATCAACACCGACGG
AGCATACAGTAGTAACATGAAGCAGGGAGGATGGGGTTTTGTGATCAGGGATCAGACTGGCGCAGTCCTTCAGGCAGGAG
CTGGTCCGGCAGCTTATCTACAAGACGCCTTCCATGCTGAAGTTGTTGCCTGTGCTGCTGCAATCAAGACTGCGAGTGAA
AGGGGTATGTCCAGAATTGAGCTAGAAACAGACTCAATGATGCTTCGCTACTCGCCCCGGAGTTGTAATAAGGTGGCACA
TGAGCTTGCCGCGTATGGTTGTAATCTCCAGACCGTGTCTTCCTGGGCAGGCTGCCCGCCTGGTCTGGAACGGCTGGTAT
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis