Browse Element(s) Details


OsAffx.12012.1.S1_at

Description tigr:9630.m01184
TID=OsAffx.12012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1293011/11hypothetical protein
LOC_Os10g218901/11Glycosyltransferase QUASIMODO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed
LOC_Os02g12919NANA2+6822933..6823169NA
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein
LOC_Os02g12940NANA2+6831702..6834761Leucine Rich Repeat family protein, expressed
LOC_Os02g12950OsAffx.2588.1.S1_at9/112+6845277..6846826hypothetical protein
LOC_Os02g12960OsAffx.24219.1.S1_at11/112+6849060..6850485hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12012.1.S1_at--199--7151Chr02:6826660..6826684 (25 bp)
GTCTTCGTGCAACATGCCTCATCGC
LOC_Os02g12930
OsAffx.12012.1.S1_at--1137--2031Chr02:6826712..6826736 (25 bp)
ACTTCGTTCTTCTCTGGCAAATGCA
LOC_Os02g12930
OsAffx.12012.1.S1_at--327--10631Chr02:6826714..6826738 (25 bp)
TTCGTTCTTCTCTGGCAAATGCATG
LOC_Os02g12930
OsAffx.12012.1.S1_at--668--9951Chr02:6826762..6826786 (25 bp)
TACGCTCTTCTCGTGCCGGAGGCTT
LOC_Os02g12930
OsAffx.12012.1.S1_at--1050--9171Chr02:6826775..6826799 (25 bp)
TGCCGGAGGCTTTCTCTGCTAGTCT
LOC_Os02g12930
OsAffx.12012.1.S1_at--172--10071Chr02:6826794..6827073 (25 bp)
TAGTCTCCAGATCGCTGCACTGTTT
LOC_Os02g12930
OsAffx.12012.1.S1_at--557--531Chr02:6827059..6827083 (25 bp)
ATCGCTGCACTGTTTGGTTTTTTAC
LOC_Os02g12930
OsAffx.12012.1.S1_at--798--7871Chr02:6827074..6827098 (25 bp)
GGTTTTTTACTACTCACAGTGCTCT
LOC_Os02g12930
OsAffx.12012.1.S1_at--57--3772Chr10:10921675..10921698 (24 bp)
CTCTTCTGCTGCTGTAATAGCAAGA
LOC_Os10g21890
OsAffx.12012.1.S1_at--30--6611Chr02:6827120..6827144 (25 bp)
GATTGTGGAATAGCACCTACTAGCC
LOC_Os02g12930
OsAffx.12012.1.S1_at--747--5231Chr02:6827127..6827151 (25 bp)
GAATAGCACCTACTAGCCACCAGAT
LOC_Os02g12930
Target Sequence 
GTCTTCGTGCAACATGCCTCATCGCCAACGTCGCCGTATCTTCCTCGACTACACTTCGTTCTTCTCTGGCAAATGCATGC
TGCTCCGGCAATTCTATCCCTCTACGCTCTTCTCGTGCCGGAGGCTTTCTCTGCTAGTCTCCAGATCGCTGCACTGTTTG
GTTTTTTACTACTCACAGTGCTCTTCTGCTGCTGTAATAGCAAGAGATTGTGGAATAGCACCTACTAGCCACCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis