Browse Element(s) Details


OsAffx.24219.1.S1_at

Description tigr:9630.m01187
TID=OsAffx.24219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1296011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein
LOC_Os02g12940NANA2+6831702..6834761Leucine Rich Repeat family protein, expressed
LOC_Os02g12950OsAffx.2588.1.S1_at9/112+6845277..6846826hypothetical protein
LOC_Os02g12960OsAffx.24219.1.S1_at11/112+6849060..6850485hypothetical protein
LOC_Os02g12970Os.27639.1.S1_x_at8/112+6861021..6866710transposon protein, putative, unclassified, expressed
LOC_Os02g12970Os.53731.1.S1_at3/112+6861021..6866710transposon protein, putative, unclassified, expressed
LOC_Os02g12970OsAffx.8980.1.S1_at3/112+6861021..6866710transposon protein, putative, unclassified, expressed
LOC_Os02g12970OsAffx.1746.1.S1_at1/112+6861021..6866710transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24219.1.S1_at--276--4771Chr02:6850431..6850455 (25 bp)
GCTGCTTCAGCATGGAGGCAGGGCC
LOC_Os02g12960
OsAffx.24219.1.S1_at--433--3471Chr02:6850413..6850437 (25 bp)
CAGGGCCGAGGTGGCTGTAGATGCA
LOC_Os02g12960
OsAffx.24219.1.S1_at--1115--6311Chr02:6850394..6850418 (25 bp)
GATGCAGAGCTTGCCCCGCCGGTGT
LOC_Os02g12960
OsAffx.24219.1.S1_at--94--9231Chr02:6850342..6850366 (25 bp)
TCCACCAGAGCTTGTGCAGACAGCG
LOC_Os02g12960
OsAffx.24219.1.S1_at--1003--5511Chr02:6849138..6849162 (25 bp)
GAAAAGAACACCTACTCGTGCAGGA
LOC_Os02g12960
OsAffx.24219.1.S1_at--499--5491Chr02:6849133..6849157 (25 bp)
GAACACCTACTCGTGCAGGAGTTGT
LOC_Os02g12960
OsAffx.24219.1.S1_at--285--3791Chr02:6849124..6849148 (25 bp)
CTCGTGCAGGAGTTGTAGGTGAATT
LOC_Os02g12960
OsAffx.24219.1.S1_at--100--10811Chr02:6849112..6849136 (25 bp)
TTGTAGGTGAATTAGGTCCAGCCGA
LOC_Os02g12960
OsAffx.24219.1.S1_at--115--5211Chr02:6849104..6849128 (25 bp)
GAATTAGGTCCAGCCGAGGTAGCCG
LOC_Os02g12960
OsAffx.24219.1.S1_at--315--10451Chr02:6849101..6849125 (25 bp)
TTAGGTCCAGCCGAGGTAGCCGCGC
LOC_Os02g12960
OsAffx.24219.1.S1_at--1159--9211Chr02:6849096..6849120 (25 bp)
TCCAGCCGAGGTAGCCGCGCTGTGC
LOC_Os02g12960
Target Sequence 
GCTGCTTCAGCATGGAGGCAGGGCCGAGGTGGCTGTAGATGCAGAGCTTGCCCCGCCGGTGTCGTCCACAACCTCGCCGG
CTGCTACCCTCCACCAGAGCTTGTGCAGACAGCGGAGAAAAGAACACCTACTCGTGCAGGAGTTGTAGGTGAATTAGGTC
CAGCCGAGGTAGCCGCGCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis