Browse Element(s) Details


OsAffx.1746.1.S1_at

Description gb:NM_184107.1
DB_XREF= gi:34895307
GEN=P0698G03.30
TID=OsAffx.1746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0698G03.30 (P0698G03.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g292392/11purine permease, putative, expressed
LOC_Os12g224701/11transposon protein, putative, unclassified
LOC_Os02g129701/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein
LOC_Os09g29284Os.54337.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29284OsAffx.6437.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29300OsAffx.6438.1.S1_at11/119+17784709..17785710expressed protein
LOC_Os09g29310OsAffx.6439.1.S1_x_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29310OsAffx.6439.1.S1_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1746.1.S1_at--589--4071Chr01:991103..991127 (25 bp)
CGAGCGCTCACTAGTACGGAACAAT
NONE
OsAffx.1746.1.S1_at--272--4532Chr01:990971..990995 (25 bp)
GCCCCGCCGGATTCAAGTTATAAAT
NONE
OsAffx.1746.1.S1_at--711--332Chr01:990952..990976 (25 bp)
ATAAATCTTAATTTCCTGGTGCCGG
NONE
OsAffx.1746.1.S1_at--447--10672Chr01:990940..990964 (25 bp)
TTCCTGGTGCCGGATTGTCATACAA
NONE
OsAffx.1746.1.S1_at--190--8732Chr01:990925..990949 (25 bp)
TGTCATACAACAACGCCCGGCGAGG
NONE
OsAffx.1746.1.S1_at--474--6152Chr01:990904..990928 (25 bp)
GAGGTCTCCTGTGGTGGCCTGCTTC
NONE
OsAffx.1746.1.S1_at--1073--10571Chr01:990882..990906 (25 bp)
TTCTCACTCTTTGTCAGGCATCGAT
NONE
OsAffx.1746.1.S1_at--694--2812Chr01:990183..990206 (24 bp)
AAGTTGCCAGGAGACCAAGAGGAAC
NONE
OsAffx.1746.1.S1_at--564--1154Chr10:20573413..20573812 (25 bp)
AGTCGAGACGGAGATGCTCAGGCAA
NONE
OsAffx.1746.1.S1_at--891--9635Chr10:20573397..20573420 (24 bp)
TCAGGCAAGCATGCCCTAGACGAAG
NONE
OsAffx.1746.1.S1_at--1022--21931Chr12:12685282..12685306 (25 bp)
ACAACGACGATGTCCGGCGCCTCTT
NONE
Target Sequence 
CGAGCGCTCACTAGTACGGAACAATCCCTACCCTCTTCCCGGCCGGCGGCGGTGGCGCTCCGCCGTCAGCGTGCACCACC
ATGCTCGCCGACGCCCTCGTGCCCCTCGATGGGATTCACTGGATGCGACGGTGCCCCGCCGGATTCAAGTTATAAATCTT
AATTTCCTGGTGCCGGATTGTCATACAACAACGCCCGGCGAGGTCTCCTGTGGTGGCCTGCTTCTCACTCTTTGTCAGGC
ATCGATGAAGTTGCCAGGAGACCAAGAGGAACAGAGAATCGAAGTCGAGACGGAGATGCTCAGGCAAGCATGCCCTAGAC
GAAGGCCACCAATCCTGGAGGGGGCGCAGCCAGTGACGGGAAACGCCACCGCCGCGCCACGCCTCATCGCCGGGACGTCT
ACGACCACCACTGCCGCAGCCGTCATCGCCGTCGACCTCACCGGCGCCGCATCCACGTCAAGCCGCGACGACAACGACGA
TGTCCGGCGCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis