Browse Element(s) Details


Os.51207.1.S1_s_at

Description gb:AK061600.1
DB_XREF= gi:32971618
TID=Os.51207.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B08, full insert sequence.
FL= gb:AK061600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2927011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein
LOC_Os09g29284Os.54337.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29284OsAffx.6437.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29300OsAffx.6438.1.S1_at11/119+17784709..17785710expressed protein
LOC_Os09g29310OsAffx.6439.1.S1_x_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29310OsAffx.6439.1.S1_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29320Os.47130.4.A1_x_at1/119+17797812..17798138retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51207.1.S1_s_at--2--4711Chr09:17772749..17772773 (25 bp)
GCGGCGTCATCTGCTGAGGGTGGAT
LOC_Os09g29270
Os.51207.1.S1_s_at--38--551Chr09:17772663..17772687 (25 bp)
ATCCGACGGTGGTGGCGTCTACTGA
LOC_Os09g29270
Os.51207.1.S1_s_at--504--7151Chr09:17772647..17772671 (25 bp)
GTCTACTGAGGGTGGATCTGGCAAC
LOC_Os09g29270
Os.51207.1.S1_s_at--388--9511Chr09:17772603..17772627 (25 bp)
TCTCTTCTCCGTCCGGCGCGATGGT
LOC_Os09g29270
Os.51207.1.S1_s_at--569--811Chr09:17772583..17772607 (25 bp)
ATGGTGGTGCCCGATGGTGGATCCG
LOC_Os09g29270
Os.51207.1.S1_s_at--606--8031Chr09:17772550..17772574 (25 bp)
GGAGTGAACTTCTGTGATGTATGTT
LOC_Os09g29270
Os.51207.1.S1_s_at--1066--2051Chr09:17772543..17772567 (25 bp)
ACTTCTGTGATGTATGTTATTCTTG
LOC_Os09g29270
Os.51207.1.S1_s_at--853--731Chr09:17772530..17772554 (25 bp)
ATGTTATTCTTGTTGTTATTCTTGG
LOC_Os09g29270
Os.51207.1.S1_s_at--1111--6791Chr09:17772516..17772540 (25 bp)
GTTATTCTTGGATGTGATGTATGTT
LOC_Os09g29270
Os.51207.1.S1_s_at--474--6653Chr12:25674642..25674661 (20 bp)
GTTGTTGTTCTTGGATGATTTCGTT
NONE
Os.51207.1.S1_s_at--114--7992Chr02:27651499..27651523 (24 bp)
GGATGATTTCGTTATGTTGTTGTTT
NONE
Target Sequence 
GCGGCGTCATCTGCTGAGGGTGGATCCGGCAACGGCGGCTTCCTCCGCCGCCTCTCTTCTCCCTCCGGCGCGGTGGTCGC
GGGTGGATCCGACGGTGGTGGCGTCTACTGAGGGTGGATCTGGCAACGGCGGCTTCCTCCGCCGCCTCTCTTCTCCGTCC
GGCGCGATGGTGGTGCCCGATGGTGGATCCGGCGGCAGGGGAGTGAACTTCTGTGATGTATGTTATTCTTGTTGTTATTC
TTGGATGTGATGTATGTTGTTGTTGTTCTTGGATGATTTCGTTATGTTGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51207.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis