Browse Element(s) Details


OsAffx.30073.1.S1_at

Description tigr:9637.m02583
TID=OsAffx.30073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F3H9.12 protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2921010/11purine permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30073.1.S1_at--195--9751Chr09:17747574..17747598 (25 bp)
TAAGTTTGTCTCTCTAAGACGGATC
LOC_Os09g29210
OsAffx.30073.1.S1_at--1049--1391Chr09:17747558..17747582 (25 bp)
AGACGGATCATGCTTCGAGCATCTA
LOC_Os09g29210
OsAffx.30073.1.S1_at--573--451Chr09:17747538..17747562 (25 bp)
ATCTACTACTTCTGCACAATGTGCT
LOC_Os09g29210
OsAffx.30073.1.S1_at--540--2231Chr09:17747523..17747547 (25 bp)
ACAATGTGCTTGTGACGAACTTATT
LOC_Os09g29210
OsAffx.30073.1.S1_at--464--8071Chr09:17747459..17747483 (25 bp)
GGAGCTGAAGTGACCGTGCTCTCTA
LOC_Os09g29210
OsAffx.30073.1.S1_at--213--6031Chr09:17747430..17747454 (25 bp)
GAGAGGATCTGCTCACGGCGAGCCT
LOC_Os09g29210
OsAffx.30073.1.S1_at--320--5871Chr09:17747411..17747435 (25 bp)
GAGCCTTGTTGAGCGCGACGAGCTT
LOC_Os09g29210
OsAffx.30073.1.S1_at--117--9391Chr09:17747274..17747298 (25 bp)
TCGATGACCGGCAGCCAGTAGGCGA
LOC_Os09g29210
OsAffx.30073.1.S1_at--263--11Chr09:17747258..17747282 (25 bp)
AGTAGGCGAACCACCCGGTGACGAT
LOC_Os09g29210
OsAffx.30073.1.S1_at--168--4051Chr09:17747237..17747261 (25 bp)
CGATGTCAAGGTAGCCGAAGGCGTC
LOC_Os09g29210
OsAffx.30073.1.S1_at--1091--1631Chr09:17747175..17747199 (25 bp)
AGCGTCTTCAGGCACTGCTGGGCCT
NONE
Target Sequence 
TAAGTTTGTCTCTCTAAGACGGATCATGCTTCGAGCATCTACTACTTCTGCACAATGTGCTTGTGACGAACTTATTGTTT
AACCATGGACCATGGAGATGAAACGTACTAGCTGGGGAGCTGAAGTGACCGTGCTCTCTACGCCGAGAGGATCTGCTCAC
GGCGAGCCTTGTTGAGCGCGACGAGCTTGTCCCTCGGCGGCAGGACCGCCTTCACGGCGTCGACGGCGAGGACCCGGTCG
AACCAGGCCTTCATCAGGGGCAGCGCCTCGTCGGTGACGACTTCGACGCCGCAGGCCTCCTCGATGACCGGCAGCCAGTA
GGCGAACCACCCGGTGACGATGTCAAGGTAGCCGAAGGCGTCGCCGCCGAAGAACTTCTTCCCCTCCAGGGCCGTCTCCA
GCGTCTTCAGGCACTGCTGGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis