Browse Element(s) Details


Os.54056.1.S1_at

Description gb:AK101607.1
DB_XREF= gi:32986816
TID=Os.54056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052A16, full insert sequence.
FL= gb:AK101607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2916011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29140NANA9+17710052..17711694hypothetical protein
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54056.1.S1_at--224--8111Chr09:17731122..17731146 (25 bp)
GGACGGACGTGCTGATCTCGTCGCA
LOC_Os09g29160
Os.54056.1.S1_at--980--671Chr09:17731087..17731111 (25 bp)
ATGACGAATCTGGTGTTCATGGACA
LOC_Os09g29160
Os.54056.1.S1_at--1078--9611Chr09:17731071..17731095 (25 bp)
TCATGGACAGGAACAGCAGCATCAT
LOC_Os09g29160
Os.54056.1.S1_at--234--9671Chr09:17730903..17730927 (25 bp)
TCAGCTGCTACAAGAACCGCCAGAT
LOC_Os09g29160
Os.54056.1.S1_at--879--1871Chr09:17730870..17730894 (25 bp)
ACGAGGCCTACTTCGCGCAGTGGGC
LOC_Os09g29160
Os.54056.1.S1_at--969--4071Chr09:17730771..17730795 (25 bp)
CGACGTGCCAGTGCAGCTAACTGAA
LOC_Os09g29160
Os.54056.1.S1_at--106--691Chr09:17730733..17730757 (25 bp)
ATGATCAAGTTGCATTGGGTCGTGA
LOC_Os09g29160
Os.54056.1.S1_at--433--8631Chr09:17730718..17730742 (25 bp)
TGGGTCGTGATTCGTGAAGCTTTAC
LOC_Os09g29160
Os.54056.1.S1_at--417--8991Chr09:17730704..17730728 (25 bp)
TGAAGCTTTACGTGCACGCTGGTGG
LOC_Os09g29160
Os.54056.1.S1_at--383--3011Chr09:17730589..17730613 (25 bp)
AATGCAACTGTAACTCTTGATCCGA
LOC_Os09g29160
Os.54056.1.S1_at--493--7051Chr09:17730580..17730604 (25 bp)
GTAACTCTTGATCCGAGCATTTTTT
LOC_Os09g29160
Target Sequence 
GGACGGACGTGCTGATCTCGTCGCACGGGGCGCAGATGACGAATCTGGTGTTCATGGACAGGAACAGCAGCATCATGGAG
TTCTACCCCAAGGGGTGGCGAGAGAGGGCGGGAGGCGGGCAGTTCGTGTACCGGTGGGGCGCGGACAGGTCGGGGATGCG
GCACGAGGGCTCGTGGTGGGATCCCCACGGCGAGCCGTGCCCCGGCTCGCCGGACATCCTCAGCTGCTACAAGAACCGCC
AGATCGGCCACGACGAGGCCTACTTCGCGCAGTGGGCGGCCAGGGTGTTCGCGGCGGCCAAGGAGCGCAAGGCCGGCGGC
TCGCCGGCGTCCACGCGGCGACGAGAAGCGCCGACGTGCCAGTGCAGCTAACTGAAGTATGATCAGTTAATGATCAAGTT
GCATTGGGTCGTGATTCGTGAAGCTTTACGTGCACGCTGGTGGCATGCAGGGAGCCAGGGATGATAATTCAATGGTCTGA
TTAATATTGTGTTATACCTTATATATACTTGTATCTGAATAAGCAACCTGAAAAATGCAACTGTAACTCTTGATCCGAGC
ATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis