Browse Element(s) Details


Os.9119.1.S1_at

Description gb:AK063444.1
DB_XREF= gi:32973462
TID=Os.9119.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F04, full insert sequence.
FL= gb:AK063444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2919011/11Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006164biological_processpurine nucleotide biosynthesis
GO:0004639molecular_functionphosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9119.1.S1_at--392--6571Chr09:17744385..17744409 (25 bp)
GATTCAGTTCTGGTCTTGAGCCTGA
LOC_Os09g29190
Os.9119.1.S1_at--164--5351Chr09:17744569..17744790 (25 bp)
GAAGATGCGGTTCTGCCTGAAGCTC
LOC_Os09g29190
Os.9119.1.S1_at--46--8371Chr09:17744970..17744991 (22 bp)
GGCGGTACATTTTCCTGTTTGAGAC
LOC_Os09g29190
Os.9119.1.S1_at--1001--6031Chr09:17745011..17745107 (25 bp)
GAGATCCCCAAAACTCAGGAGCCGA
LOC_Os09g29190
Os.9119.1.S1_at--962--5111Chr09:17745134..17745158 (25 bp)
GCACAAGCCTTGCAGAACCTTTGAT
LOC_Os09g29190
Os.9119.1.S1_at--678--9771Chr09:17745210..17745234 (25 bp)
TAAGAGGTGCACTTCTGGACTTCTG
LOC_Os09g29190
Os.9119.1.S1_at--750--8111Chr09:17745226..17745250 (25 bp)
GGACTTCTGGTACCGGCATTACTAA
LOC_Os09g29190
Os.9119.1.S1_at--79--3111Chr09:17745255..17745279 (25 bp)
AATATCAGCGTACGTTCATGCCGTC
LOC_Os09g29190
Os.9119.1.S1_at--978--6731Chr09:17745268..17745292 (25 bp)
GTTCATGCCGTCTATCATTCAAAGT
LOC_Os09g29190
Os.9119.1.S1_at--624--2831Chr09:17745289..17745313 (25 bp)
AAGTATACGTGTGCTCCGAGATGTA
LOC_Os09g29190
Os.9119.1.S1_at--968--4511Chr09:17745361..17745385 (25 bp)
GCCCTTAATAGTTTCCCTGTTGTGA
LOC_Os09g29190
Target Sequence 
GATTCAGTTCTGGTCTTGAGCCTGAAAATGTTGACAAGGAGTTCTTAAGACTCTGGTTCAAGAACAATTGCAATCCATAC
GAAGATGCGGTTCTGCCTGAAGCTCCAGAAGAACTAGTTTGTGAACTAGCTTGGCGGTACATTTTCCTGTTTGAGACAAT
TACAAACACAAAGTTCGAGATCCCCAAAACTCAGGAGCCGATTCACGAAAGAATATCAAGGAATGTTGCACAAGCCTTGC
AGAACCTTTGATTGTGGATAAGGAAGAGGATTTCCAGAACAAAAACTTGCTTGCTGATGAGAATAAGAGGTGCACTTCTG
GACTTCTGGTACCGGCATTACTAATAATAATATCAGCGTACGTTCATGCCGTCTATCATTCAAAGTATACGTGTGCTCCG
AGATGTAATATGGTTGGAAACAACTATAGCCAGAATCGCCTGGCAATACTCTCTGCCCTTAATAGTTTCCCTGTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis