Browse Element(s) Details

Os.18351.1.S1_at

Description

gb:AK122120.1
DB_XREF= gi:37991766
TID=Os.18351.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129G18, full insert sequence.
FL= gb:AK122120.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g29170	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g29140	NA	NA	9	+	17710052..17711694	hypothetical protein
LOC_Os09g29150	NA	NA	9	+	17728236..17728895	hypothetical protein
LOC_Os09g29160	Os.54056.1.S1_at	11/11	9	+	17730573..17732251	expressed protein
LOC_Os09g29170	Os.18351.2.S1_at	11/11	9	+	17733588..17737427	Protein kinase domain containing protein, expressed
LOC_Os09g29170	Os.18351.1.S1_at	11/11	9	+	17733588..17737427	Protein kinase domain containing protein, expressed
LOC_Os09g29170	Os.18351.2.S1_x_at	9/11	9	+	17733588..17737427	Protein kinase domain containing protein, expressed
LOC_Os09g29180	Os.41695.2.S1_x_at	7/11	9	+	17739943..17741068	hypothetical protein
LOC_Os09g29180	Os.41695.3.S1_x_at	7/11	9	+	17739943..17741068	hypothetical protein
LOC_Os09g29180	Os.41695.5.S1_x_at	3/11	9	+	17739943..17741068	hypothetical protein
LOC_Os09g29180	Os.41695.4.S1_x_at	1/11	9	+	17739943..17741068	hypothetical protein
LOC_Os09g29190	Os.9119.1.S1_at	11/11	9	+	17741621..17745504	Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200	Os.11962.1.S1_at	11/11	9	+	17746186..17747739	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200	Os.39243.1.A1_x_at	2/11	9	+	17746186..17747739	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210	Os.11962.2.A1_at	11/11	9	+	17747183..17750262	purine permease, putative, expressed
LOC_Os09g29210	OsAffx.30073.1.S1_at	10/11	9	+	17747183..17750262	purine permease, putative, expressed
LOC_Os09g29210	Os.11962.3.S1_x_at	9/11	9	+	17747183..17750262	purine permease, putative, expressed
LOC_Os09g29239	Os.18356.2.S1_at	11/11	9	+	17754699..17770402	purine permease, putative, expressed
LOC_Os09g29239	OsAffx.6436.1.S1_at	11/11	9	+	17754699..17770402	purine permease, putative, expressed
LOC_Os09g29239	Os.18356.1.S1_x_at	11/11	9	+	17754699..17770402	purine permease, putative, expressed
LOC_Os09g29239	OsAffx.1746.1.S1_at	2/11	9	+	17754699..17770402	purine permease, putative, expressed
LOC_Os09g29239	Os.32889.2.S1_at	1/11	9	+	17754699..17770402	purine permease, putative, expressed
LOC_Os09g29239	Os.10219.1.S1_at	1/11	9	+	17754699..17770402	purine permease, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0004685	molecular_function	calcium- and calmodulin-dependent protein kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18351.1.S1_at--822--919	1	Chr09:17733728..17733752 (25 bp)	TGCCATTTCCCTGTGCATGATTCAT	LOC_Os09g29170
Os.18351.1.S1_at--446--1055	1	Chr09:17733708..17733732 (25 bp)	TTCATCTTGTTTCTTTCCAGTCTAT	LOC_Os09g29170
Os.18351.1.S1_at--407--959	1	Chr09:17733704..17733728 (25 bp)	TCTTGTTTCTTTCCAGTCTATTGAG	LOC_Os09g29170
Os.18351.1.S1_at--699--683	1	Chr09:17733700..17733724 (25 bp)	GTTTCTTTCCAGTCTATTGAGACTA	LOC_Os09g29170
Os.18351.1.S1_at--1019--1035	1	Chr09:17733674..17733698 (25 bp)	TTTTGTTGGCAGAGGTTTTCAACCT	LOC_Os09g29170
Os.18351.1.S1_at--859--101	1	Chr09:17733662..17733686 (25 bp)	AGGTTTTCAACCTCATATCACAAAA	LOC_Os09g29170
Os.18351.1.S1_at--424--969	1	Chr09:17733645..17733669 (25 bp)	TCACAAAATTCACTTCTCTAAACTT	LOC_Os09g29170
Os.18351.1.S1_at--884--239	1	Chr09:17733626..17733650 (25 bp)	AAACTTTTAACGTACTTCATCATGG	LOC_Os09g29170
Os.18351.1.S1_at--806--1053	1	Chr09:17733611..17733635 (25 bp)	TTCATCATGGATCTATATGCCCTTG	LOC_Os09g29170
Os.18351.1.S1_at--234--83	1	Chr09:17733605..17733629 (25 bp)	ATGGATCTATATGCCCTTGTTGTAA	LOC_Os09g29170
Os.18351.1.S1_at--186--45	1	Chr09:17733601..17733625 (25 bp)	ATCTATATGCCCTTGTTGTAATGAA	LOC_Os09g29170

Target Sequence

TGCCATTTCCCTGTGCATGATTCATCTTGTTTCTTTCCAGTCTATTGAGACTAATTTTGTTGGCAGAGGTTTTCAACCTC
ATATCACAAAATTCACTTCTCTAAACTTTTAACGTACTTCATCATGGATCTATATGCCCTTGTTGTAATGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis