Browse Element(s) Details


Os.18351.2.S1_x_at

Description gb:AK109479.1
DB_XREF= gi:32994688
TID=Os.18351.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H01, full insert sequence.
FL= gb:AK109479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g291709/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29140NANA9+17710052..17711694hypothetical protein
LOC_Os09g29150NANA9+17728236..17728895hypothetical protein
LOC_Os09g29160Os.54056.1.S1_at11/119+17730573..17732251expressed protein
LOC_Os09g29170Os.18351.2.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.1.S1_at11/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29170Os.18351.2.S1_x_at9/119+17733588..17737427Protein kinase domain containing protein, expressed
LOC_Os09g29180Os.41695.2.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.3.S1_x_at7/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.5.S1_x_at3/119+17739943..17741068hypothetical protein
LOC_Os09g29180Os.41695.4.S1_x_at1/119+17739943..17741068hypothetical protein
LOC_Os09g29190Os.9119.1.S1_at11/119+17741621..17745504Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
LOC_Os09g29200Os.11962.1.S1_at11/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29200Os.39243.1.A1_x_at2/119+17746186..17747739Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os09g29210Os.11962.2.A1_at11/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210OsAffx.30073.1.S1_at10/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29210Os.11962.3.S1_x_at9/119+17747183..17750262purine permease, putative, expressed
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18351.2.S1_x_at--1074--1511NONE
AGCAGGGATGCTCTTCAAACTTGAA
NONE
Os.18351.2.S1_x_at--581--2771Chr09:17734060..17734084 (25 bp)
AAGAGCAACCTCTGTACGGCATTCT
LOC_Os09g29170
Os.18351.2.S1_x_at--423--5831Chr09:17734030..17734054 (25 bp)
GACCTGATGTACAGCTCCTGATTGG
LOC_Os09g29170
Os.18351.2.S1_x_at--389--5291Chr09:17734006..17734030 (25 bp)
GAATGGTGCATATTTTTCTCGCAGA
LOC_Os09g29170
Os.18351.2.S1_x_at--136--2311Chr09:17733961..17733985 (25 bp)
AAAGGCTCCATCAGGTGGTGTCTCT
LOC_Os09g29170
Os.18351.2.S1_x_at--493--3091NONE
AATAACCTGGGTTTCTGCCAAATCA
NONE
Os.18351.2.S1_x_at--991--7751Chr09:17733862..17733886 (25 bp)
GGTGATGCTGATAAACCGGCCATTA
LOC_Os09g29170
Os.18351.2.S1_x_at--92--9831Chr09:17733814..17733838 (25 bp)
TAAATATCATGATCCCCTTAGCTCC
LOC_Os09g29170
Os.18351.2.S1_x_at--408--4791Chr09:17733794..17733818 (25 bp)
GCTCCTGGGTTGCTAATCTATGCGT
LOC_Os09g29170
Os.18351.2.S1_x_at--1008--4631Chr09:17733773..17733797 (25 bp)
GCGTACGTAGCAAATTGTTTCAATT
LOC_Os09g29170
Os.18351.2.S1_x_at--391--2451Chr09:17733739..17733763 (25 bp)
AAAATATCGTGTGCCATTTCCCTGT
LOC_Os09g29170
Target Sequence 
AGCAGGGATGCTCTTCAAACTTGAAGAGCAACCTCTGTACGGCATTCTGACCCGACCTGATGTACAGCTCCTGATTGGAA
TGGTGCATATTTTTCTCGCAGAGGTTGGTCTGATGCCAGTTAAAAGGCTCCATCAGGTGGTGTCTCTGAGCTGAGGATAA
TAACCTGGGTTTCTGCCAAATCAAATAAGCGTTTGACATGGGTATGATGTAGTTTTTATCTGGTGATGCTGATAAACCGG
CCATTAGAAGGCCGGTTCTGTAAATTTTGTAAATATCATGATCCCCTTAGCTCCTGGGTTGCTAATCTATGCGTACGTAG
CAAATTGTTTCAATTAATGTTGATAAAATATCGTGTGCCATTTCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18351.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis