Browse Element(s) Details


Os.10219.1.S1_at

Description gb:AK121526.1
DB_XREF= gi:37991149
TID=Os.10219.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030B10, full insert sequence.
FL= gb:AK121526.1 gb:AK067608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5400011/11mRNA capping enzyme family protein, putative, expressed
LOC_Os09g292391/11purine permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53979NANA2+33042730..33042927NA
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006370biological_processmRNA capping
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0003824molecular_functioncatalytic activity
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10219.1.S1_at--1092--5311Chr02:33070742..33070766 (25 bp)
GAAGGGTCTCACGTACTGATATACT
LOC_Os02g54000
Os.10219.1.S1_at--35--6511Chr02:33070759..33070783 (25 bp)
GATATACTTCCTCCTGCGGATAATG
LOC_Os02g54000
Os.10219.1.S1_at--4--1431Chr02:33070784..33070808 (25 bp)
AGAAAGGCATCCTTGGTCCTGGACC
LOC_Os02g54000
Os.10219.1.S1_at--552--7251Chr02:33070799..33070823 (25 bp)
GTCCTGGACCTGCAGATATGAGGCT
LOC_Os02g54000
Os.10219.1.S1_at--226--2211Chr02:33070837..33070861 (25 bp)
ACAACTGGATATAGGCTCACTGCTG
LOC_Os02g54000
Os.10219.1.S1_at--790--5151Chr02:33070870..33070894 (25 bp)
GCAACGATGCTCCTGCAAAGCTGCA
LOC_Os02g54000
Os.10219.1.S1_at--494--3118Chr12:19244136..19244278 (24 bp)
AATATTACTCCCTTTGTCCTATAAT
NONE
Os.10219.1.S1_at--473--9011Chr02:33071143..33071167 (25 bp)
TGAATCTAGATAACCTCCTGTCCAG
LOC_Os02g54000
Os.10219.1.S1_at--661--9271Chr02:33071158..33071182 (25 bp)
TCCTGTCCAGATTCGGTGTATCATG
LOC_Os02g54000
Os.10219.1.S1_at--833--6071Chr02:33071227..33071251 (25 bp)
GAGTACATCATTACCCGTTTACGAC
LOC_Os02g54000
Os.10219.1.S1_at--569--5711Chr02:33071249..33071273 (25 bp)
GACTGACTCAGTACCGACTGTCTTT
LOC_Os02g54000
Target Sequence 
GAAGGGTCTCACGTACTGATATACTTCCTCCTGCGGATAATGAGAAAGGCATCCTTGGTCCTGGACCTGCAGATATGAGG
CTTTAANGTTCACTGAACAACTGGATATAGGCTCACTGCTGGAGTTGGAGCAACGATGCTCCTGCAAAGCTGCAATTGGT
GGTTTATGGATGCATACATATGCATGATGNCTCACGTAGTTTCTAAATTTATTTAGGCTCTACCTGTAAAAAGAAAACCT
TTCAGTTATTCTTGAGAAGATAGAATTAGCACCAATGTCATATGTCACGGTAGAAGATATTGATAGAGTAGTTCACTAAT
TTTGTAGTGGATCCTTTAAATATTACTCCCTTTGTCCTATAATATAGCAACCTAATACTAGATGAGACATTGAAATGTTA
CAATGAATCTAGATAACCTCCTGTCCAGATTCGGTGTATCATGAAATGTCCAATCCGGTATTAGATTATTATATTATGGG
ATGGAGGGAGTACATCATTACCCGTTTACGACTGACTCAGTACCGACTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis