Browse Element(s) Details


OsAffx.3061.1.S1_x_at

Description tigr:9630.m05350
TID=OsAffx.3061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY050383 AT3g42950F18P9_110
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g540309/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3061.1.S1_x_at--369--6171Chr02:33092186..33092210 (25 bp)
GAGGATGTCCGCATTTGGGAGTCAC
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--413--6511Chr02:33092261..33092285 (25 bp)
GATATCTCCTATCGCAACATAACCT
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--399--351Chr02:33092279..33092303 (25 bp)
ATAACCTTCGACAATGTCCGTGCTG
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--696--7911Chr02:33092317..33092341 (25 bp)
GGTTGACTACAATGAGCACGCTGAT
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--1074--7651Chr02:33092355..33092379 (25 bp)
GGGATGCCTTTCCAGACATCACAAA
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--237--8511Chr02:33092434..33092458 (25 bp)
TGGCAGCAGTGACATTCCCATCAAG
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--842--951Chr02:33092472..33092496 (25 bp)
AGGACATGTCTATCGGCATCAGCTA
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--290--10211Chr02:33092509..33092533 (25 bp)
TATTTTCCAGTGTTCCTTCATTGAG
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--692--7431Chr02:33092538..33092562 (25 bp)
GTGTCATCGGGTCAGTGTTTCCAAA
LOC_Os02g54030
OsAffx.3061.1.S1_x_at--1106--1471NONE
AGCAATGTGGAAGCTGCATGGTTAC
NONE
OsAffx.3061.1.S1_x_at--966--4991Chr02:33093170..33093194 (25 bp)
GCATGGTTACATGACAAGGAGTTCA
NONE
Target Sequence 
GAGGATGTCCGCATTTGGGAGTCACGGCGAGGTTTGAGAATAAAGACTGCCATAGGAAGAGGGGGCTACATCCGCGATAT
CTCCTATCGCAACATAACCTTCGACAATGTCCGTGCTGGTATTGTGATAAAGGTTGACTACAATGAGCACGCTGATGATG
GGTATGACCGGGATGCCTTTCCAGACATCACAAACATATCATTCAAGGAAATACATGGGCGAGGTGTCCGGGTGCCAGTC
CGTGCTCATGGCAGCAGTGACATTCCCATCAAGGACATCAGCTTTCAGGACATGTCTATCGGCATCAGCTACAAGAAGAA
ACATATTTTCCAGTGTTCCTTCATTGAGGGGCGTGTCATCGGGTCAGTGTTTCCAAAACCATGCGAGAATTTGGATCTCT
ACAATGAGCAAGGGCAGCTTGTTAAGCGTGCAGCAATGTGGAAGCTGCATGGTTACATGACAAGGAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3061.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis