Browse Element(s) Details


OsAffx.12633.1.S1_at

Description tigr:9630.m05352
TID=OsAffx.12633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5405011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12633.1.S1_at--681--8331Chr02:33102384..33102408 (25 bp)
GGCTGCCCAATAGCCGCGACCGCAT
LOC_Os02g54050
OsAffx.12633.1.S1_at--962--1931Chr02:33102063..33102087 (25 bp)
ACGGCAGCATCGACTGGCGCCCGGT
LOC_Os02g54050
OsAffx.12633.1.S1_at--841--8251Chr02:33102061..33102085 (25 bp)
GGCAGCATCGACTGGCGCCCGGTCA
LOC_Os02g54050
OsAffx.12633.1.S1_at--380--8351Chr02:33101995..33102019 (25 bp)
GGCGGCCATGCCTACGACTTCTTGC
LOC_Os02g54050
OsAffx.12633.1.S1_at--151--3931Chr02:33101993..33102017 (25 bp)
CGGCCATGCCTACGACTTCTTGCAG
LOC_Os02g54050
OsAffx.12633.1.S1_at--608--5791Chr02:33101932..33101956 (25 bp)
GACGACATGGTCGACGTCGTAGATG
LOC_Os02g54050
OsAffx.12633.1.S1_at--1070--5651Chr02:33101929..33101953 (25 bp)
GACATGGTCGACGTCGTAGATGAGA
LOC_Os02g54050
OsAffx.12633.1.S1_at--1041--811Chr02:33101926..33101950 (25 bp)
ATGGTCGACGTCGTAGATGAGAGCA
LOC_Os02g54050
OsAffx.12633.1.S1_at--929--1891Chr02:33101919..33101943 (25 bp)
ACGTCGTAGATGAGAGCAGCGCTTC
LOC_Os02g54050
OsAffx.12633.1.S1_at--939--6931Chr02:33101914..33101938 (25 bp)
GTAGATGAGAGCAGCGCTTCGCTTT
LOC_Os02g54050
OsAffx.12633.1.S1_at--168--8911Chr02:33101909..33101933 (25 bp)
TGAGAGCAGCGCTTCGCTTTGGAGC
LOC_Os02g54050
Target Sequence 
GGCTGCCCAATAGCCGCGACCGCATCTGGCTGGGCTCCTACGACTCGCCGGAGAAGGCGGCGCGGGCGTTCGACGCCGCC
TTCGTCACGCTCCGCGGCCACGGCGCCGCCGGCGCCGACCTCAACTTCCCGGACTCGCCGCCGTCGTGCGACGCCCGCAG
CAGCGACCCGCGGCAGGTGCAGGCCGCCGCGCTCTCCCACGCCAACCGCGCCCACGTCACGCCGCAGCAGGCGGCCGCGG
CGCTCATGTCGCCGCCCTCGCTGTCGCCGCCGCCGGGGTTCGCCACCGGCAGCGAGGTGGTGGCGCCCGCCGTGCGCGCC
GACGGCAGCATCGACTGGCGCCCGGTCATGGCGCACCCGCCGCCGCTGTACTCGCCGCCCGGCTGGGGCGGCGGCCATGC
CTACGACTTCTTGCAGCCGCCGCCGCCGTCGCCGCCGTTGCCGTCGTGCGACGACGACATGGTCGACGTCGTAGATGAGA
GCAGCGCTTCGCTTTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis