Browse Element(s) Details


Os.50833.1.S1_at

Description gb:AK058863.1
DB_XREF= gi:32968881
TID=Os.50833.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G11, full insert sequence.
FL= gb:AK058863.1 gb:AK102801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1637011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g426102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g365802/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g540201/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16350OsAffx.11409.1.S1_at1/117+9547542..9549103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16360OsAffx.31869.3.S1_x_at8/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.3.S1_at7/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.1.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_x_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.5.S1_x_at3/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.21269.1.S1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16370Os.50833.1.S2_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370Os.50833.1.S1_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370OsAffx.11394.1.S1_at1/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16380OsAffx.16295.1.S1_at11/117+9572447..9572866hypothetical protein
LOC_Os07g16389NANA7+9583718..9584079NA
LOC_Os07g16400Os.45173.1.S1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.46610.1.A1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.38751.1.A1_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.28492.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.20877.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50833.1.S1_at--761--3731Chr07:9568881..9568905 (25 bp)
CTCAAGAACCGGACATGGCTCGTTA
LOC_Os07g16370
Os.50833.1.S1_at--589--8471Chr07:9568866..9568890 (25 bp)
TGGCTCGTTACCCTGTGGATGACAT
LOC_Os07g16370
Os.50833.1.S1_at--618--7992Chr07:9568850..9568874 (25 bp)
GGATGACATCACTGTACGTACTGCA
LOC_Os07g16370
Os.50833.1.S1_at--189--5012Chr11:25147809..25147833 (25 bp)
GCAGGCTGCATGTGCCACTTCAAAA
LOC_Os11g42610
Os.50833.1.S1_at--728--4672Chr12:22361690..22361712 (23 bp)
GCGGTATGGCACATCCCGTAATGGA
LOC_Os12g36580
Os.50833.1.S1_at--250--9871Chr07:9568681..9568705 (25 bp)
TACAGGGCAGTCCAGCTTGATTTTG
LOC_Os07g16370
Os.50833.1.S1_at--435--2512Chr11:25148018..25148042 (25 bp)
AACATAATCCTGTGGCGCAAGCGTT
LOC_Os11g42610
Os.50833.1.S1_at--363--10332Chr12:22361875..22361898 (24 bp)
TTTCATTGTCTTCCCTTCAGGAGAT
LOC_Os12g36580
Os.50833.1.S1_at--416--811Chr07:9568545..9568569 (25 bp)
ATGGGTCTAGCTCTGAAGGGCTTTC
LOC_Os07g16370
Os.50833.1.S1_at--963--2471Chr07:9568422..9568446 (25 bp)
AACACCATAGGCTAGCTTCTTCAGA
LOC_Os07g16370
Os.50833.1.S1_at--614--9191Chr07:9568314..9568338 (25 bp)
TGCCTAACATGTCTGAGCCAACTTT
LOC_Os07g16370
Target Sequence 
CTCAAGAACCGGACATGGCTCGTTACCCTGTGGATGACATCACTGTACGTACTGCATGCAGGCTGCATGTGCCACTTCAA
AACATCACTCAAGAGGTGGCACGCGGTATGGCACATCCCGTAATGGAGGGGGGAAAGATACACAGTAATCTGATACCAAG
TGGCTACTCAAGGGTCGAAGTGGGGGACGTGCCGAGCAGATACAGGGCAGTCCAGCTTGATTTTGCTCCAGAGAAGGGAA
TAAACACTCTTGGAGAAGCCGTCCACAACATAATCCTGTGGCGCAAGCGTTTCATTGTCTTCCCTTCAGGAGATAGTGAT
GATGAGCCAAGCGATGATGGGTCTAGCTCTGAAGGGCTTTCTGTCTCCCCTCGAAGGATGCCAACTCCACCACCATNGCC
ACGTAAGAGCCAGTCTCCTCCACCGGCACAACGTAAGAGCCCATCTCCTCCACCAGCAGAACACCATAGGCTAGCTTCTT
CAGACCCACCGAAAAAAAGGGGGCGCCTATGTAAAACATCCCAGATGTTCGAACCCCCATCTCTGAAGAAGACCAAGAAG
GCGCCNTTGCCTAACATGTCTGAGCCAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis