Browse Element(s) Details


Os.51632.1.S1_at

Description gb:AK063223.1
DB_XREF= gi:32973241
TID=Os.51632.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E08, full insert sequence.
FL= gb:AK063223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5408011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51632.1.S1_at--978--7831Chr02:33121079..33121103 (25 bp)
GGTAGCCTACTGGAATTAGCTGAAA
LOC_Os02g54080
Os.51632.1.S1_at--35--8891Chr02:33121023..33121047 (25 bp)
TGATGGCGCCATAATTTGGCTCTCC
LOC_Os02g54080
Os.51632.1.S1_at--271--8491Chr02:33121007..33121031 (25 bp)
TGGCTCTCCCTTGTTGCTATGATGT
LOC_Os02g54080
Os.51632.1.S1_at--243--4871Chr02:33120992..33121016 (25 bp)
GCTATGATGTTTCTCTGGTGTCGTA
LOC_Os02g54080
Os.51632.1.S1_at--111--2591Chr02:33120968..33120992 (25 bp)
AACGTGTCGTGTGTTGAGTCCACTA
LOC_Os02g54080
Os.51632.1.S1_at--109--10871Chr02:33120862..33120886 (25 bp)
TTGGCCAATCAAAACGTGCAGCTAT
LOC_Os02g54080
Os.51632.1.S1_at--1085--7531Chr02:33120714..33120738 (25 bp)
GTGGCTCTTAGTCTTCATAGTGTCT
LOC_Os02g54080
Os.51632.1.S1_at--779--7431Chr02:33120647..33120671 (25 bp)
GTGTTTGTGTTGTCATATCCTTTTG
LOC_Os02g54080
Os.51632.1.S1_at--428--10311Chr02:33120615..33120639 (25 bp)
TTTCTTGATGAACTGTCCTAAACTG
LOC_Os02g54080
Os.51632.1.S1_at--1063--9231Chr02:33120600..33120624 (25 bp)
TCCTAAACTGTTTTCTGGCGGTCTG
LOC_Os02g54080
Os.51632.1.S1_at--325--8351Chr02:33120584..33120608 (25 bp)
GGCGGTCTGGCCTATCATATAAAAA
LOC_Os02g54080
Target Sequence 
GGTAGCCTACTGGAATTAGCTGAAATTTACACGGAATTAGCCTTGTATGAATGACATGATGGCGCCATAATTTGGCTCTC
CCTTGTTGCTATGATGTTTCTCTGGTGTCGTAACGTGTCGTGTGTTGAGTCCACTATTTAGCTAAGCTAATTATGGCTGC
TTGCTGTATATAATTGCGGTAAAATGTGATTGTGGAAGAAGAAAAGTGTGTTTTGTATTGGCCAATCAAAACGTGCAGCT
ATGTTGTTTAGCAAAAAAAAAAAAAAAGGTGAGAAAGCTATGGATCGTCAAATCAATTGTGTCACAGGGGGGAACTTGAC
AGTTTGCAAATATAATGAACTATGGATCTTCGAATAGTTTGATTAGTGGCTCTTAGTCTTCATAGTGTCTTGAATGACAG
GTATCTTGTTTACCATGGTTGACTGGACGTAGGTGTTTGTGTTGTCATATCCTTTTGAATTCAGTTTCTTGATGAACTGT
CCTAAACTGTTTTCTGGCGGTCTGGCCTATCATATAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis