Browse Element(s) Details


Os.7407.1.S1_x_at

Description gb:AK099467.1
DB_XREF= gi:32984676
TID=Os.7407.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023L19, full insert sequence.
FL= gb:AK099467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5409011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7407.1.S1_x_at--687--3111Chr02:33124306..33124330 (25 bp)
AATATATACATCACTGCCGACCAGG
LOC_Os02g54090
Os.7407.1.S1_x_at--703--4511Chr02:33124291..33124315 (25 bp)
GCCGACCAGGACTTGATTATCTCAT
LOC_Os02g54090
Os.7407.1.S1_x_at--750--8951Chr02:33124032..33124056 (25 bp)
TGACAGCAGCAGATCTACCATTCGG
LOC_Os02g54090
Os.7407.1.S1_x_at--523--9971Chr02:33124017..33124041 (25 bp)
TACCATTCGGAGCACTGTTTCTGAT
LOC_Os02g54090
Os.7407.1.S1_x_at--1147--10751Chr02:33123988..33124012 (25 bp)
TTGAGGACATCACCGCACTATTCTA
LOC_Os02g54090
Os.7407.1.S1_x_at--232--2311Chr02:33123926..33123950 (25 bp)
AAAGGCCTGGTGCATGTCTGGTCAA
LOC_Os02g54090
Os.7407.1.S1_x_at--257--6951Chr02:33123870..33123894 (25 bp)
GTAGATACCTTCTGTACCTGTGTTT
LOC_Os02g54090
Os.7407.1.S1_x_at--663--3891Chr02:33123853..33123877 (25 bp)
CTGTGTTTCTTTTTACTGCTCCATA
LOC_Os02g54090
Os.7407.1.S1_x_at--145--291Chr02:33123801..33123825 (25 bp)
ATAGTGGAACTGTGTGCTCCCTGAC
LOC_Os02g54090
Os.7407.1.S1_x_at--108--7311Chr02:33123788..33123812 (25 bp)
GTGCTCCCTGACATTATACGATTCG
LOC_Os02g54090
Os.7407.1.S1_x_at--987--231Chr02:33123730..33123754 (25 bp)
ATATCAACCGTGGTCCGTGGTGGAA
LOC_Os02g54090
Target Sequence 
AATATATACATCACTGCCGACCAGGACTTGATTATCTCATACTGCAAAGCTTCAAAGGAGGTCAGAGATAGTGGCGGCTG
CGAGGGCATAGCTCCCCCCACGGGATCAATCAACATGAGCAACATCTTCACGGGAAAGTGCGTCGCCAAGATCTCCCCCC
TCGACCCTACTCTCACAATTGCTCCTCGAAAAAGAGGTGACAGCAGCAGATCTACCATTCGGAGCACTGTTTCTGATGCT
CTTGAGGACATCACCGCACTATTCTACGACGAGGACCGCAACGAAATCTACACTGGAAACAGCAAAGGCCTGGTGCATGT
CTGGTCAAATTAGTTTCACCTCCCCTCATCATCAACCTTGTAGATACCTTCTGTACCTGTGTTTCTTTTTACTGCTCCAT
AACAAATGTAACGATCATCCGGTCTGATATAGTGGAACTGTGTGCTCCCTGACATTATACGATTCGTTAGAATAATCTGA
GTGTAGATTTTCTTGATGTATATCAACCGTGGTCCGTGGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7407.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis