Browse Element(s) Details


Os.49874.2.S1_x_at

Description gb:AK119213.1
DB_XREF= gi:37988836
TID=Os.49874.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E07, full insert sequence.
FL= gb:AK119213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5406011/1120 kDa chaperonin, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005516molecular_functioncalmodulin binding
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49874.2.S1_x_at--603--7911Chr02:33109767..33109791 (25 bp)
GGTTGGATCCCAAGTCGTATATTCA
LOC_Os02g54060
Os.49874.2.S1_x_at--465--671Chr02:33109643..33109667 (25 bp)
ATGAAGCCTCTTAGCGATCGTGTTC
LOC_Os02g54060
Os.49874.2.S1_x_at--906--6391Chr02:33109489..33109652 (25 bp)
GATCGTGTTCTTATCAAGGTCGCTG
LOC_Os02g54060
Os.49874.2.S1_x_at--983--5331Chr02:33109459..33109483 (25 bp)
GAAGATAAAACTCCTGGTGGCCTAT
LOC_Os02g54060
Os.49874.2.S1_x_at--803--7711Chr02:33109444..33109468 (25 bp)
GGTGGCCTATTGCTTACTGAAACAA
LOC_Os02g54060
Os.49874.2.S1_x_at--377--1011Chr02:33109261..33109285 (25 bp)
AGGATTCCATTGTCGGTCTCTGCAG
LOC_Os02g54060
Os.49874.2.S1_x_at--407--3491Chr02:33109239..33109263 (25 bp)
CAGGCAGCACTGTTCTATATTCCAA
LOC_Os02g54060
Os.49874.2.S1_x_at--467--6071Chr02:33109201..33109225 (25 bp)
GAGTTCAAGGGCTCTGATGGCACGA
LOC_Os02g54060
Os.49874.2.S1_x_at--628--7451Chr02:33109159..33109183 (25 bp)
GTGTCAGATCTAATGGCTGTCCTCT
LOC_Os02g54060
Os.49874.2.S1_x_at--663--9011Chr02:33109132..33109156 (25 bp)
TGAATTACCAGGTGCGCTCAGCTGA
LOC_Os02g54060
Os.49874.2.S1_x_at--567--1611Chr02:33109113..33109137 (25 bp)
AGCTGAGCCATCCATCGTACTATGC
LOC_Os02g54060
Target Sequence 
GGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAG
AGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTC
GCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGT
GGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATT
CCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTC
CTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49874.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis