Browse Element(s) Details


Os.52170.1.S1_at

Description gb:AK065421.1
DB_XREF= gi:32975439
TID=Os.52170.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013011O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011O20, full insert sequence.
FL= gb:AK065421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5411011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52170.1.S1_at--125--2351Chr02:33147665..33147689 (25 bp)
AAAGACAAGATGGATCCGTATGCCT
LOC_Os02g54110
Os.52170.1.S1_at--261--3351Chr02:33147744..33147768 (25 bp)
CACGCAAGGGCATGAGCAGTGTCAT
LOC_Os02g54110
Os.52170.1.S1_at--350--1531Chr02:33147758..33147782 (25 bp)
AGCAGTGTCATGAAGGTGACCAAGA
LOC_Os02g54110
Os.52170.1.S1_at--316--271Chr02:33147888..33147912 (25 bp)
ATAGGGCAAGGAAGCTTTGTATAGC
LOC_Os02g54110
Os.52170.1.S1_at--1044--10791Chr02:33147904..33147928 (25 bp)
TTGTATAGCTGAACCGATGGCCCTT
LOC_Os02g54110
Os.52170.1.S1_at--616--2611Chr02:33147915..33147939 (25 bp)
AACCGATGGCCCTTGGCAGTTGGGA
LOC_Os02g54110
Os.52170.1.S1_at--748--5551Chr02:33147942..33147966 (25 bp)
GAAAGTTTTGGACGTGTACAGTGCT
LOC_Os02g54110
Os.52170.1.S1_at--1113--3971Chr02:33147954..33147978 (25 bp)
CGTGTACAGTGCTTGGTGAGGATTC
LOC_Os02g54110
Os.52170.1.S1_at--176--6551Chr02:33147974..33147998 (25 bp)
GATTCGGCCGTAGTAGTTGTTTTTG
LOC_Os02g54110
Os.52170.1.S1_at--248--7171Chr02:33148018..33148042 (25 bp)
GTCGAAGAGAAACACTAGGTTCCAT
LOC_Os02g54110
Os.52170.1.S1_at--1131--4211Chr02:33148189..33148213 (25 bp)
CCGCTGACACTTCGCTGTAATGGAA
LOC_Os02g54110
Target Sequence 
AAAGACAAGATGGATCCGTATGCCTNCTGGCCATTAGACAGGAAGNTTNTGAACCGCAGGTNGGACCGCAAAGCGGCGGC
ACGCAAGGGCATGAGCAGTGTCATGAAGGTGACCAAGAAGCTNGAAGGGAAGAGCGCCNCCAGCGCGCTCGCTGNTAAGA
GAACGCAAACAAAAAACCGGAAGCAGAAGAAGAGCAAGTAAGGAGNCGAAGGGNCAGAGAGAGATAGGGCAAGGAAGCTT
TGTATAGCTGAACCGATGGCCCTTGGCAGTTGGGAGGGAAAGTTTTGGACGTGTACAGTGCTTGGTGAGGATTCGGCCGT
AGTAGTTGTTTTTGCTCGTTTCATNTCCTATCTGTCGAAGAGAAACACTAGGTTCCATTNTTGCCAAAAANNGAGATTTT
TTGAGGGGAAAAAGGGGGAAATTTTGACNCCCGTCGGTATGNCGGTNCCAGATTCAGATTAGATTTAATTTTNTTGTAAG
TTTTTGATTGATGACTATTGAATTTGAAATTTGTTGCTTCCTGCCCGCTGACACTTCGCTGTAATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis