Browse Element(s) Details


OsAffx.4222.1.A1_at

Description tigr:9633.m00045
TID=OsAffx.4222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g541305/11DnaJ domain containing protein, expressed
LOC_Os06g073601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4222.1.A1_at--1137--113Chr06:3539990..3540013 (24 bp)
ATTCATCACACATGGTCGCACACAA
LOC_Os06g07360
OsAffx.4222.1.A1_at--772--4577Chr11:21255365..21255388 (24 bp)
GCGCTCTTTCCAAATCAACCATGTA
NONE
OsAffx.4222.1.A1_at--806--733Chr11:21255384..21255408 (25 bp)
ATGTAACGAGGATGACCCCGGCGTC
NONE
OsAffx.4222.1.A1_at--418--7091Chr05:210353..210377 (25 bp)
GTCAAACGTCTTGCGATCGATCTTC
NONE
OsAffx.4222.1.A1_at--20--6433Chr11:21255424..21255448 (25 bp)
GATCTTCGCAACAGTTTGCCGGGCA
NONE
OsAffx.4222.1.A1_at--1082--2211Chr05:210541..210565 (25 bp)
AAATTGGTGCAAGCTTCCAGCCTCG
NONE
OsAffx.4222.1.A1_at--829--5372Chr07:5259425..5259445 (21 bp)
GAAGAACTTGCATCTTGCTGGTGCG
NONE
OsAffx.4222.1.A1_at--629--10672Chr05:210648..210672 (25 bp)
TTCCAGATAATCTTGCCGAGCGGGC
NONE
OsAffx.4222.1.A1_at--803--5012Chr05:210671..210695 (25 bp)
GCAGGATGTTCTACCGGCCGAAAGA
NONE
OsAffx.4222.1.A1_at--593--10032Chr11:21255750..21255774 (25 bp)
TAGAGTAGGCAGACCGCACCGAGAA
NONE
OsAffx.4222.1.A1_at--255--4451Chr05:210738..210762 (25 bp)
GCCTTCCATATCATAGAGTCCGTAC
NONE
Target Sequence 
ATTCATCACACATGGTCGCACACAACTGCGTGACCGACGAGGCCGTTCCCTCGAAAACCCGTGCGTTGCGCTCTTTCCAA
ATCAACCATGTAACGAGGATGACCCCGGCGTCAAACGTCTTGCGATCGATCTTCGCAACAGTTTGCCGGGCAGCGAGCCA
CCAGCCGGCAAAGTCCGAGGACGGCGGCGAGCAGTAGAGGGTCAAACGAGCCTGAACCTGCACCCAAACTTGCTGCGAGA
AGGTGCAGGCTTGGAAGATGTGTTGGCAGGACTCTCCATCCTTAGAACAAAGGTGACAAATTGGTGCAAGCTTCCAGCCT
CGGCGCTGCAGGTTATCAGCTGTTAAATAGGCATTGCGGACCGCAAGGAACATGAAGAACTTGCATCTTGCTGGTGCGTG
GGATTTCCAGATAATCTTGCCGAGCGGGCAGGATGTTCTACCGGCCGAAAGAATAGAGTAGGCAGACCGCACCGAGAAGT
CACCATTAGGTGCCGCCTTCCATATCATAGAGTCCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4222.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis