Browse Element(s) Details


Os.51749.1.S1_at

Description gb:AK063602.1
DB_XREF= gi:32973620
TID=Os.51749.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C03, full insert sequence.
FL= gb:AK063602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5414011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006972biological_processhyperosmotic response
GO:0009408biological_processresponse to heat
GO:0005829cellular_componentcytosol
GO:0051082molecular_functionunfolded protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51749.1.S1_at--870--9291Chr02:33173904..33173928 (25 bp)
TCCGACATCCAGGTGCGTACAAAAT
LOC_Os02g54140
Os.51749.1.S1_at--881--7291Chr02:33173916..33173940 (25 bp)
GTGCGTACAAAATCCGAGCCCTGAA
LOC_Os02g54140
Os.51749.1.S1_at--182--9851Chr02:33173921..33173945 (25 bp)
TACAAAATCCGAGCCCTGAATTTCC
LOC_Os02g54140
Os.51749.1.S1_at--1097--2271Chr02:33173925..33173949 (25 bp)
AAATCCGAGCCCTGAATTTCCTCGA
LOC_Os02g54140
Os.51749.1.S1_at--725--5871Chr02:33173931..33173955 (25 bp)
GAGCCCTGAATTTCCTCGATTCGCG
LOC_Os02g54140
Os.51749.1.S1_at--431--5211Chr02:33173938..33173962 (25 bp)
GAATTTCCTCGATTCGCGTTCGAAT
LOC_Os02g54140
Os.51749.1.S1_at--489--4151Chr02:33173952..33173976 (25 bp)
CGCGTTCGAATCAGCGAGTTAGTTT
LOC_Os02g54140
Os.51749.1.S1_at--90--3391Chr02:33173963..33173987 (25 bp)
CAGCGAGTTAGTTTGGGCGCGATTC
LOC_Os02g54140
Os.51749.1.S1_at--209--10851Chr02:33173975..33173999 (25 bp)
TTGGGCGCGATTCTTTCTTGTCTGC
LOC_Os02g54140
Os.51749.1.S1_at--496--8391Chr02:33173978..33174002 (25 bp)
GGCGCGATTCTTTCTTGTCTGCGCA
LOC_Os02g54140
Os.51749.1.S1_at--337--9591Chr02:33173990..33174014 (25 bp)
TCTTGTCTGCGCAGGTGACGCTGGA
LOC_Os02g54140
Target Sequence 
TCCGACATCCAGGTGCGTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTTAGTTTGGGCGCG
ATTCTTTCTTGTCTGCGCAGGTGACGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis