Browse Element(s) Details


Os.15534.1.S1_at

Description gb:AK059701.1
DB_XREF= gi:32969719
TID=Os.15534.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C12, full insert sequence.
FL= gb:AK065621.1 gb:AK059701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5415011/11SacI homology domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.15534.1.S1_at--779--6331Chr02:33192255..33192279 (25 bp)
GATGCTTGTGTCATGTACGCGGTAC
LOC_Os02g54150
Os.15534.1.S1_at--1003--4671Chr02:33192273..33192297 (25 bp)
GCGGTACGCGTTGGCTACTTTGAAG
LOC_Os02g54150
Os.15534.1.S1_at--509--8991Chr02:33192293..33192317 (25 bp)
TGAAGGCCAAAACTTGTCTTTTCCA
LOC_Os02g54150
Os.15534.1.S1_at--127--3291Chr02:33192386..33192410 (25 bp)
CAAACTTCAGACATTCGCCTTGTGA
LOC_Os02g54150
Os.15534.1.S1_at--1146--231Chr02:33192410..33192434 (25 bp)
ATATATGTCCACATCATCCCATAGC
LOC_Os02g54150
Os.15534.1.S1_at--941--351Chr02:33192425..33192449 (25 bp)
ATCCCATAGCCCTCTTAGGAAAGTA
LOC_Os02g54150
Os.15534.1.S1_at--186--10571Chr02:33192455..33192479 (25 bp)
TTCTGGTTATTTGTTCCCATCTTTC
LOC_Os02g54150
Os.15534.1.S1_at--129--6711Chr02:33192467..33192491 (25 bp)
GTTCCCATCTTTCTTGTAGGAGCAA
LOC_Os02g54150
Os.15534.1.S1_at--1040--6491Chr02:33192495..33192519 (25 bp)
GATAGGCGTTTTTCTCAATTTTTGA
LOC_Os02g54150
Os.15534.1.S1_at--1143--8731Chr02:33192660..33192684 (25 bp)
TGTAAAGCATCGTCCACTATATGTG
LOC_Os02g54150
Os.15534.1.S1_at--972--2031Chr02:33192675..33192699 (25 bp)
ACTATATGTGGCTTGGTTCGTTGAT
LOC_Os02g54150
Target Sequence
GATGCTTGTGTCATGTACGCGGTACGCGTTGGCTACTTTGAAGGCCAAAACTTGTCTTTTCCAAGTGGTCATGAGACGGG
AATTNGTGATTTGAGTAGGGAATTAGGAGTGAGAAGAGATAGATGGCACAGCAAACTTCAGACATTCGCCTTGTGATATA
TGTCCACATCATCCCATAGCCCTCTTAGGAAAGTATAACNTTCTGGTTATTTGTTCCCATCTTTCTTGTAGGAGCAAGTA
GATAGGCGTTTTTCTCAATTTTTGAAAAGAAAGTAGAGGTAGATTCATATGGATATATAATTTTTGTTCTTTCGAAAAAT
GTACCNTTGTGGGAACATTCCGTTTGATATGTAAATATTATTTTATGCTTGGCGTGTTTTGGGTTGTTGAGGTCACAAGG
TGGATTGTAAAGCATCGTCCACTATATGTGGCTTGGTTCGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis