Browse Element(s) Details


Os.47330.1.S1_at

Description gb:AK105110.1
DB_XREF= gi:32990319
TID=Os.47330.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F08, full insert sequence.
FL= gb:AK105110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5419011/11Pectinesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54230OsAffx.12636.1.S1_at11/112+33240246..33241154hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47330.1.S1_at--975--451Chr02:33215854..33215878 (25 bp)
ATCTCTATCCATCGGTGCCGGATCA
LOC_Os02g54190
Os.47330.1.S1_at--157--5091Chr02:33215808..33215832 (25 bp)
GCACGCCGGTGTATCTGGGCCGTCC
LOC_Os02g54190
Os.47330.1.S1_at--486--7631Chr02:33215752..33215776 (25 bp)
GGGACGTTCCTGGACCGTTCGATCG
LOC_Os02g54190
Os.47330.1.S1_at--537--4411Chr02:33215700..33215724 (25 bp)
GCCAGTTCGGGCTCAGCACGCTCTA
LOC_Os02g54190
Os.47330.1.S1_at--868--9511Chr02:33215679..33215703 (25 bp)
TCTACTATGGCGAGTACGGCAACAC
LOC_Os02g54190
Os.47330.1.S1_at--561--7851Chr02:33215577..33215601 (25 bp)
GGTTCACCGTGGCAAACTTTATCGT
LOC_Os02g54190
Os.47330.1.S1_at--995--4851Chr02:33215540..33215564 (25 bp)
GCTACCTGCCACTGGAGTTACCTAC
LOC_Os02g54190
Os.47330.1.S1_at--1034--6051Chr02:33215526..33215550 (25 bp)
GAGTTACCTACACTTCAGGTCTGTA
LOC_Os02g54190
Os.47330.1.S1_at--913--2791Chr02:33215469..33215493 (25 bp)
AAGATGGTGTTGTGTTCTGTTCTCT
LOC_Os02g54190
Os.47330.1.S1_at--837--9471Chr02:33215454..33215478 (25 bp)
TCTGTTCTCTGTATCACCTGATTAA
LOC_Os02g54190
Os.47330.1.S1_at--3--8091Chr02:33215422..33215446 (25 bp)
GGAGCTAAATTGCATGTTGTTAACT
LOC_Os02g54190
Target Sequence 
ATCTCTATCCATCGGTGCCGGATCACCGGCGCGCCGGACCTCGGCGGCACGCCGGTGTATCTGGGCCGTCCGTGGCGGAG
GTACTCACGGACGGTCGTGATGGGGACGTTCCTGGACCGTTCGATCGCACCGGCCGGGTGGCTCNGAGTGGTCGGGCCAG
TTCGGGCTCAGCACGCTCTACTATGGCGAGTACGGCAACACNGGGCCNGGCGNGGGGACACGTCGGCGGGTGACGTGGAG
CGGCGTGCACACGTNGATGTCCACGTCGGACGCCACGAGGTTCACCGTGGCAAACTTTATCGTTGGGGATGCGTGGCTAC
CTGCCACTGGAGTTACCTACACTTCAGGTCTGTAGTGGCNTACTAGTAGCNAAAAANAAAAAAATGAAGATGGTGTTGTG
TTCTGTTCTCTGTATCACCTGATTAATTAACTTGGAGCTAAATTGCATGTTGTTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis