Browse Element(s) Details


Os.2354.1.S1_at

Description gb:AF193803.1
DB_XREF= gi:6689917
TID=Os.2354.1
CNT=66
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2354 (NCBI UniGene Cluster)
DEF=Oryza sativa transcription factor EREBP1 mRNA, complete cds.
PROD=transcription factor EREBP1
FL= gb:AF193803.1 gb:AK119885.1 gb:AK064027.1 gb:AK103783.1 gb:AK119643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5416011/11ethylene response element binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2354.1.S1_at--114--311Chr02:33194522..33194546 (25 bp)
ATAGCCTTCTCAACCTGGATGGATC
LOC_Os02g54160
Os.2354.1.S1_at--821--6631Chr02:33194490..33194514 (25 bp)
GTTGTCAGCAACATGGACCTCTGGA
LOC_Os02g54160
Os.2354.1.S1_at--923--8071Chr02:33194468..33194492 (25 bp)
GGAGCTTTGATGACATGCCCGTTAG
LOC_Os02g54160
Os.2354.1.S1_at--187--611Chr02:33194454..33194478 (25 bp)
ATGCCCGTTAGCGATTTCTATTGAG
LOC_Os02g54160
Os.2354.1.S1_at--530--5331Chr02:33194423..33194447 (25 bp)
GAAGTCTTCTAGTCGGAGCATGTAC
LOC_Os02g54160
Os.2354.1.S1_at--423--1251Chr02:33194287..33194311 (25 bp)
AGATTGGGAGGCACCTGCATGGCAC
LOC_Os02g54160
Os.2354.1.S1_at--875--6911Chr02:33194167..33194191 (25 bp)
GTATGGCAGCCATCTATGAGACTCA
LOC_Os02g54160
Os.2354.1.S1_at--234--10391Chr02:33194115..33194139 (25 bp)
TTTTCTGTCGTTGCTACCTGTATAT
LOC_Os02g54160
Os.2354.1.S1_at--252--5491Chr02:33194084..33194108 (25 bp)
GAACATCGTGAATCCATGGCCATTA
LOC_Os02g54160
Os.2354.1.S1_at--1076--10111Chr02:33194049..33194073 (25 bp)
TATGTTGTTGACTGCTCTTTCTTTC
LOC_Os02g54160
Os.2354.1.S1_at--351--3891Chr02:33194016..33194040 (25 bp)
CTGTGCTGCGCTATGTTGGTGATAA
LOC_Os02g54160
Target Sequence 
ATAGCCTTCTCAACCTGGATGGATCACAGGATGTTGTCAGCAACATGGACCTCTGGAGCTTTGATGACATGCCCGTTAGC
GATTTCTATTGAGGAATTCGAAGTCTTCTAGTCGGAGCATGTACACAGGGAAAAAAAAGGAATAAATACTATTGGAGATT
GGGAGGCACCTGCATGGCACCTTGGGGGTAGCATATCGTTATGTTTAGCTTAGATGCAAAAGGCTGCATCCTGAAACTCT
TTGGTGATTGGACCTGTTCCCTATCCGCTGTCTATGTATGGCAGCCATCTATGAGACTCAAGAACTGCTTTTTTTTTTTC
CGTTCTAGTTTTCTGTCGTTGCTACCTGTATATGGCTATGAACATCGTGAATCCATGGCCATTATGTTTTAATCTATGTT
GTTGACTGCTCTTTCTTTCGGTCTTTGCTGTGCTGCGCTATGTTGGTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis