Browse Element(s) Details


Os.51970.1.S1_at

Description gb:AK064434.1
DB_XREF= gi:32974452
TID=Os.51970.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D06, full insert sequence.
FL= gb:AK064434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5417011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g542802/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0009933biological_processmeristem organization
GO:0009934biological_processregulation of meristem organization
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51970.1.S1_at--420--5691Chr02:33213553..33213577 (25 bp)
GACTTGCAGATGTAGTAAACCTGGT
LOC_Os02g54170
Os.51970.1.S1_at--121--4631Chr02:33213561..33213585 (25 bp)
GATGTAGTAAACCTGGTCGACCTCC
LOC_Os02g54170
Os.51970.1.S1_at--300--3811Chr02:33213582..33213606 (25 bp)
CTCCCCAAGCACCAGGTTAGAGTTG
LOC_Os02g54170
Os.51970.1.S1_at--629--1491Chr02:33213589..33213613 (25 bp)
AGCACCAGGTTAGAGTTGCTCTCTG
LOC_Os02g54170
Os.51970.1.S1_at--939--3472Chr02:33213594..33213618 (25 bp)
CAGGTTAGAGTTGCTCTCTGGAAAT
LOC_Os02g54170
Os.51970.1.S1_at--1127--6052Chr02:33213601..33213625 (25 bp)
GAGTTGCTCTCTGGAAATATTATTA
LOC_Os02g54170
Os.51970.1.S1_at--513--2471Chr02:33213679..33213703 (25 bp)
AACAGAGATGAATTAATGGGAACTT
LOC_Os02g54170
Os.51970.1.S1_at--418--2971Chr02:33213693..33213717 (25 bp)
AATGGGAACTTGTGTTTCATCAGAG
LOC_Os02g54170
Os.51970.1.S1_at--446--8171Chr02:33213697..33213721 (25 bp)
GGAACTTGTGTTTCATCAGAGGTGT
LOC_Os02g54170
Os.51970.1.S1_at--242--9651Chr02:33213712..33213736 (25 bp)
TCAGAGGTGTAAATAGCGGCCGATT
LOC_Os02g54170
Os.51970.1.S1_at--243--1331Chr02:33213714..33213738 (25 bp)
AGAGGTGTAAATAGCGGCCGATTTT
LOC_Os02g54170
Target Sequence 
GACTTGCAGATGTAGTAAACCTGGTCGACCTCCCCAAGCACCAGGTTAGAGTTGCTCTCTGGAAATATTATTATTACCAC
AGTAAATTAACTNAGGGTTCGTCAGTGTAATTCCGGGGCTCNGTCCAAACAGAGATGAATTAATGGGAACTTGTGTTTCA
TCAGAGGTGTAAATAGCGGCCGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis