Browse Element(s) Details


OsAffx.24863.1.S1_x_at

Description tigr:9630.m05369
TID=OsAffx.24863.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5417011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g542806/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0009933biological_processmeristem organization
GO:0009934biological_processregulation of meristem organization
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24863.1.S1_x_at--1113--5252Chr02:33212888..33212912 (25 bp)
GAATCCCCAATGCAGTCTCAGATCT
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--713--9652Chr02:33212905..33212929 (25 bp)
TCAGATCTCTCACCCTTGATAGATG
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--191--9111Chr02:33212942..33212966 (25 bp)
TGCTGGCACCGTGGGCATTATTCAA
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--762--8171Chr02:33213072..33213096 (25 bp)
GGAACTACGCGTTGCTGAGAACACA
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--203--5812Chr02:33213133..33213157 (25 bp)
GACGCGCAGGATGTATCACCAGGTA
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--523--5411Chr02:33213184..33213208 (25 bp)
GAAGCGAACGATCACATAGACCCTG
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--600--1351Chr02:33213305..33213329 (25 bp)
AGAGAAACTCCTCTTCTGGCTGTCA
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--791--8731Chr02:33213325..33213349 (25 bp)
TGTCATGCCATCCAAGAACTCGCTG
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--804--4132Chr02:33213345..33213369 (25 bp)
CGCTGATGCCATCATTTCTGCAAAG
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--844--5312Chr02:33213375..33213399 (25 bp)
GAAGGTGCTCGATCTCAGTCGGAAC
LOC_Os02g54170
OsAffx.24863.1.S1_x_at--150--1172Chr02:33213422..33213446 (25 bp)
AGTCACTGTATTCTGCTTGGGCTTC
LOC_Os02g54170
Target Sequence 
GAATCCCCAATGCAGTCTCAGATCTCTCACCCTTGATAGATGCAATCTTGGGCTTGCTGGCACCGTGGGCATTATTCAAG
CACTAGCAGGAAATGACCAATTGGAGGAACTACGCGTTGCTGAGAACACAAACCTGGCACTACAGAGAACATTGCAGTAC
GATGAAGACGCGCAGGATGTATCACCAGGTACTGACCAAAACCAACGTACCAATGCTGAAGCGAACGATCACATAGACCC
TGATAAGATGGAGGTGCCGGATAGCGAAGACGAAGAGGCAGTCCACGAGGACACCCGTGCAGCGACCGGCCCAGACGGGA
GCTGTGCAAGTTCATGCCAGAGAAACTCCTCTTCTGGCTGTCATGCCATCCAAGAACTCGCTGATGCCATCATTTCTGCA
AAGCAACTGAAGGTGCTCGATCTCAGTCGGAACGGGTTGTCGGAAGAGGATATCCAGTCACTGTATTCTGCTTGGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24863.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis