Browse Element(s) Details


OsAffx.22004.1.S1_at

Description gb:NM_188982.1
DB_XREF= gi:34905047
GEN=P0686C03.6
TID=OsAffx.22004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.6 (P0686C03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4034011/11retrotransposon protein, putative, unclassified
LOC_Os03g248003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g159102/11retrotransposon protein, putative, unclassified
LOC_Os02g542701/11retrotransposon protein, putative, unclassified
LOC_Os04g571001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g259801/11hypothetical protein
LOC_Os02g542201/11retrotransposon protein, putative, unclassified
LOC_Os06g033001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22004.1.S1_at--463--9991Chr08:25408584..25408608 (25 bp)
TAGCGTGTGTCCGACTGGCGCATCC
LOC_Os08g40340
OsAffx.22004.1.S1_at--506--3794Chr08:25408613..25408637 (25 bp)
CTCGATCTTCGGCAGATCTTGGACA
LOC_Os08g40340
OsAffx.22004.1.S1_at--400--8653Chr08:25408885..25408909 (25 bp)
TGGGCAGCCCAAGTTACCGGTGGTC
LOC_Os08g40340
OsAffx.22004.1.S1_at--62--3391Chr08:25408916..25408940 (25 bp)
GCGATTACCCTTCAAACGCCTATGT
LOC_Os08g40340
OsAffx.22004.1.S1_at--377--2372Chr08:25408929..25408953 (25 bp)
AAACGCCTATGTCGCAGGACGATAT
LOC_Os08g40340
OsAffx.22004.1.S1_at--489--8271Chr08:25408979..25409003 (25 bp)
GGCATGGCGATGACCTCCGTAGGTT
LOC_Os08g40340
OsAffx.22004.1.S1_at--495--5831Chr08:25408990..25409014 (25 bp)
GACCTCCGTAGGTTGGTGATCTTTG
LOC_Os08g40340
OsAffx.22004.1.S1_at--139--7414Chr08:25409005..25409029 (25 bp)
GTGATCTTTGTTTTCATCTCCTTCA
LOC_Os08g40340
OsAffx.22004.1.S1_at--189--10553Chr08:25409026..25409050 (25 bp)
TTCATTCTTCTTCCCGGAGTAACTT
LOC_Os08g40340
OsAffx.22004.1.S1_at--605--6011Chr08:25409086..25409110 (25 bp)
GAGAGTAGACTTGCCGGCCAAGACC
LOC_Os08g40340
OsAffx.22004.1.S1_at--228--3911Chr08:25409100..25409124 (25 bp)
CGGCCAAGACCGTTGCATCCAATAT
LOC_Os08g40340
Target Sequence 
TAGCGTGTGTCCGACTGGCGCATCCCGAACTCGATCTTCGGCAGATCTTGGACAGGGGGGCCGCCAACGACACTCGTAAG
GGCGTGATGGAGGAGGGATGTCGATGTCGAGGATGTCCAGCAGCGTGGGCAGCCCAAGTTACCGGTGGTCGCCCCGGCGA
TTACCCTTCAAACGCCTATGTCGCAGGACGATATGGGACGAAACTCACCCGTGGAAATGGGCATGGCGATGACCTCCGTA
GGTTGGTGATCTTTGTTTTCATCTCCTTCATTCTTCTTCCCGGAGTAACTTGGTTTTTATGTTCTCGGAATGGAAGAGCA
GACCTCGAGAGTAGACTTGCCGGCCAAGACCGTTGCATCCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis