Browse Element(s) Details


OsAffx.29608.3.S1_at

Description tigr:9636.m04080
TID=OsAffx.29608.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4033011/11Sulfotransferase domain containing protein
LOC_Os09g285101/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29608.3.S1_at--714--3731Chr08:25402348..25402404 (25 bp)
CTACATGAACAAGGGCCTTCGAGCT
LOC_Os08g40330
OsAffx.29608.3.S1_at--53--7671Chr08:25402280..25402304 (25 bp)
GGGATCACTGCCTAGGCTACTGGAA
LOC_Os08g40330
OsAffx.29608.3.S1_at--221--6451Chr08:25402278..25402302 (25 bp)
GATCACTGCCTAGGCTACTGGAAGA
LOC_Os08g40330
OsAffx.29608.3.S1_at--493--3331Chr08:25402275..25402299 (25 bp)
CACTGCCTAGGCTACTGGAAGAAGA
LOC_Os08g40330
OsAffx.29608.3.S1_at--538--4431Chr08:25402271..25402295 (25 bp)
GCCTAGGCTACTGGAAGAAGAGCAT
LOC_Os08g40330
OsAffx.29608.3.S1_at--942--831Chr08:25402248..25402272 (25 bp)
ATGGAGGAACCCGACATGGTGCTCT
LOC_Os08g40330
OsAffx.29608.3.S1_at--372--7991Chr08:25402246..25402270 (25 bp)
GGAGGAACCCGACATGGTGCTCTTC
LOC_Os08g40330
OsAffx.29608.3.S1_at--558--6191Chr08:25402245..25402269 (25 bp)
GAGGAACCCGACATGGTGCTCTTCC
LOC_Os08g40330
OsAffx.29608.3.S1_at--1111--8552Chr09:17337572..17337864 (25 bp)
TGGTTGATCGGAGCAGTGGACGGCC
LOC_Os09g28510
OsAffx.29608.3.S1_at--1031--5731Chr08:25402034..25402058 (25 bp)
GACGGCCGATGGAGAACTCGGTGTT
LOC_Os08g40330
OsAffx.29608.3.S1_at--492--8731Chr08:25402013..25402037 (25 bp)
TGTTTTTCAGAAAAGGTGAAGTCGG
LOC_Os08g40330
Target Sequence 
CTACATGAACAAGGGCCTTCGAGCTGTTTGTCGATGGCTTCTCCCTGTACGGCAGTACGGGCCGATCTGGGATCACTGCC
TAGGCTACTGGAAGAAGAGCATGGAGGAACCCGACATGGTGCTCTTCCTCAAGTACGACGACATGATGGCCGACCCAGCC
GGCCACGTCAAGAAGCTCGCCGAGTTCCTCCGAGCCCCGTTCACCGACGAGGAGGTCGGCGCCGGCGTCGTCGAGGAGGT
TGTGAGGCTGTGCAGCTTCGAGAAGCTGAGCCGCCTACCCGTGAACTCCTCCGGGGTGGTTGATCGGAGCAGTGGACGGC
CGATGGAGAACTCGGTGTTTTTCAGAAAAGGTGAAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29608.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis