Browse Element(s) Details


OsAffx.29608.2.S1_s_at

Description gb:NM_188981.1
DB_XREF= gi:34905045
GEN=P0686C03.5
TID=OsAffx.29608.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.5 (P0686C03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4033011/11Sulfotransferase domain containing protein
LOC_Os08g403901/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29608.2.S1_s_at--229--4532Chr08:25402864..25402888 (25 bp)
GCCGCCGTATATGTCTTTCGTTAGG
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--187--4512Chr08:25402861..25402885 (25 bp)
GCCGTATATGTCTTTCGTTAGGATG
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--443--7152Chr08:25402852..25402876 (25 bp)
GTCTTTCGTTAGGATGTACTGCCAA
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--819--7991Chr08:25402841..25402865 (25 bp)
GGATGTACTGCCAACATCCTCGCGT
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--536--3991Chr08:25402737..25402761 (25 bp)
CGTGTCGCTGCCTCGCTGGTGCACG
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--470--2351Chr08:25402582..25402606 (25 bp)
AAAGCCCGCATGACCTTGTGCCGTT
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--31--4531Chr08:25402435..25402459 (25 bp)
GCCGCATCGTCTACCTATGCCGGGA
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--43--1512Chr08:25402423..25402447 (25 bp)
ACCTATGCCGGGAGCCCAAGGACGT
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--436--9311Chr08:25402391..25402415 (25 bp)
TCCCTGTGGCACTACATGAACAAGG
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--673--1611Chr08:25402327..25402351 (25 bp)
AGCTGTTTGTCGATGGCTTCTCCCT
LOC_Os08g40330
OsAffx.29608.2.S1_s_at--1058--6851Chr08:25402323..25402347 (25 bp)
GTTTGTCGATGGCTTCTCCCTGTAC
LOC_Os08g40330
Target Sequence 
GCCGCCGTATATGTCTTTCGTTAGGATGTACTGCCAACATCCTCGCGTCGCTTCCGACGAGGGAAGGATGGTGGACGGCG
TTCGTCCTCTACCACGGCTGCTGGATGACGCAGCAGGCCGCCACGAGCGTGTCGCTGCCTCGCTGGTGCACGCCCAGTTC
GCGCGGCGCCCCGACGATGTGCTCCTCGCCACCTACCCAAAGTGCGGCACCACCTGGCTCAAGGTGCTCTCCTTCGCCAT
CGCCAACCGCCGCCGCCGCCGGCGACCACCCCTTGCTCACCCAAAGCCCGCATGACCTTGTGCCGTTCATCGAGGTGCCC
TTCCACCACCTCCACCCTCTCGCCGCCCTCGACGCGCTCCCCTCCCCGAGGCTGCTCTCCACCCACATGCCGCCCCAGCT
GCTTCCCCGGCGCGTCGCCGAGCTCGGCTGCCGCATCGTCTACCTATGCCGGGAGCCCAAGGACGTCGTCGTCTCCCTGT
GGCACTACATGAACAAGGTCGGCAATGGCTTCTTCCTCGATCTCGACAGGGCCTTCGAGCTGTTTGTCGATGGCTTCTCC
CTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29608.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis