Browse Element(s) Details


Os.38234.1.S1_at

Description gb:AK109297.1
DB_XREF= gi:32994506
TID=Os.38234.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D06, full insert sequence.
FL= gb:AK109297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5413011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38234.1.S1_at--823--5391Chr02:33169379..33169403 (25 bp)
GAAGCTCGCCATGGTGAGCAATTGA
LOC_Os02g54130
Os.38234.1.S1_at--1034--5951Chr02:33169364..33169388 (25 bp)
GAGCAATTGAGCTCGACGGCTTCAT
LOC_Os02g54130
Os.38234.1.S1_at--293--5751Chr02:33169350..33169374 (25 bp)
GACGGCTTCATGCAAATGTTCTTTG
LOC_Os02g54130
Os.38234.1.S1_at--1110--7031Chr02:33169275..33169299 (25 bp)
GTAACTGGATTACGGCCATGGATTC
LOC_Os02g54130
Os.38234.1.S1_at--1106--4331Chr02:33169260..33169284 (25 bp)
CCATGGATTCGCCTTGTTGCTGTAA
LOC_Os02g54130
Os.38234.1.S1_at--1135--7911Chr02:33169256..33169280 (25 bp)
GGATTCGCCTTGTTGCTGTAACTGC
LOC_Os02g54130
Os.38234.1.S1_at--234--4451Chr02:33169250..33169274 (25 bp)
GCCTTGTTGCTGTAACTGCTTCATA
LOC_Os02g54130
Os.38234.1.S1_at--340--8811Chr02:33169246..33169270 (25 bp)
TGTTGCTGTAACTGCTTCATAGGTA
LOC_Os02g54130
Os.38234.1.S1_at--945--4731Chr02:33169242..33169266 (25 bp)
GCTGTAACTGCTTCATAGGTAGGGA
LOC_Os02g54130
Os.38234.1.S1_at--862--1611Chr02:33169214..33169238 (25 bp)
AGCGTGCCGTGGTAGGCGATTTCGA
LOC_Os02g54130
Os.38234.1.S1_at--223--2432Chr07:13589068..13589092 (25 bp)
AAAACTGTACAAATGCAGTGTGTCA
NONE
Target Sequence 
GAAGCTCGCCATGGTGAGCAATTGAGCTCGACGGCTTCATGCAAATGTTCTTTGTTTTTGTTCTTGTTCATGTTGTTGTC
GTCGNTCNNNCACGTTCTTGATTGGTAACTGGATTACGGCCATGGATTCGCCTTGTTGCTGTAACTGCTTCATAGGTAGG
GAAANAGCGTGCCGTGGTAGGCGATTTCGAGTTTGGANAGGTGTANATGATGGCGCCAAGTTCTTTTTTTTTTTTTTCGC
CGGGACGGCGAAGAATGCCGAAAAGGGGAAAACTGTACAAATGCAGTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis