Browse Element(s) Details


Os.14664.1.A2_at

Description gb:CB964530
DB_XREF= gi:30226638
DB_XREF=NL7_E08
CLONE=NL7_E08
TID=Os.14664.1
CNT=25
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.14664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070E05, full insert sequence
FL= gb:AK070439.1 gb:AK101869.1 gb:AK060779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g541209/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14664.1.A2_at--312--5811Chr02:33156457..33156481 (25 bp)
GACGCCAACACTGTTTTACATCTTC
LOC_Os02g54120
Os.14664.1.A2_at--608--9111NONE
TGCTGCTAGTGAGCTGTATACTCGA
NONE
Os.14664.1.A2_at--522--6891Chr02:33155055..33155079 (25 bp)
GTATACTCGAGGATGGTTCTACCAT
LOC_Os02g54120
Os.14664.1.A2_at--877--3351NONE
CACCCCATTATGAACGAGGATCTTA
NONE
Os.14664.1.A2_at--822--5611Chr02:33154824..33154848 (25 bp)
GACAACTTTGTTCTCCATTATGATC
LOC_Os02g54120
Os.14664.1.A2_at--770--10151Chr02:33154651..33154674 (24 bp)
TATACCTCCTGGCTCAAGTTTTATC
LOC_Os02g54120
Os.14664.1.A2_at--102--9951Chr02:33154593..33154617 (25 bp)
TACGCTAAGAGCAGTGTCATGACCT
LOC_Os02g54120
Os.14664.1.A2_at--186--7131Chr02:33154159..33154602 (25 bp)
GTCATGACCTAACTCTGAGGACAGT
LOC_Os02g54120
Os.14664.1.A2_at--864--1111Chr02:33154137..33154161 (25 bp)
AGTGAGAACGCAGGGCCATGCCGAT
LOC_Os02g54120
Os.14664.1.A2_at--232--511Chr02:33154029..33154053 (25 bp)
ATCGTTTGTAGATTGCACTCTCAGC
LOC_Os02g54120
Os.14664.1.A2_at--1053--9651Chr02:33154009..33154033 (25 bp)
TCAGCAACATCTCCAGGTGACCAAC
LOC_Os02g54120
Target Sequence 
GACGCCAACACTGTTTTACATCTTCTATAGCATGCCAAGGGATGAAGCTCAGCTATGTGCTGCTAGTGAGCTGTATACTC
GAGGATGGTTCTACCATAAAGAAGTGCGTGTGTGGCTCACCAGAATTCCAAATGTTGAGCCTCTGGTCAAAACACCCCAT
TATGAACGAGGATCTTATGGTTGCTTTGATCCAAACAACTGGGAGACAATCCGCAAGGACAACTTTGTTCTCCATTATGA
TCAAATAGAGAAGAAGCCAGCCATCCCTTCATCCCAAAACGTTAGGTGAAACATTTCTTATACCTCCTGGCTCAAGTTTT
ATCCTTTTTTCTCAAGGGGAGGAAGAAATTTGTGCTTACGCTAAGAGCAGTGTCATGACCTAACTCTGAGGACAGTGAGA
ACGCAGGGCCATGCCGATCTGCAGAGGGGAGGCTGCAAAACAAAAGCGGGAATGCCTGCTTAACCCTTGTAATTAGATTA
TAGTGGTGAAGTTTTCCTTTAATCGTTTGTAGATTGCACTCTCAGCAACATCTCCAGGTGACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14664.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis