Browse Element(s) Details


Os.49648.1.S1_s_at

Description gb:AK119261.1
DB_XREF= gi:37988884
TID=Os.49648.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H08, full insert sequence.
FL= gb:AK119261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5414011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54120Os.14664.1.A1_at10/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.14664.1.A2_at9/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54120Os.11862.2.S1_at1/112+33153795..33163156NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g54130Os.38234.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130Os.14181.1.S1_at11/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54130OsAffx.4222.1.A1_at5/112+33164064..33169743DnaJ domain containing protein, expressed
LOC_Os02g54140Os.51749.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54140Os.49648.1.S1_s_at11/112+33173620..33174536Hsp20/alpha crystallin family protein, expressed
LOC_Os02g54150OsAffx.5828.1.S1_x_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.15534.1.S1_at11/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.46319.1.S1_s_at9/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.52575.1.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54150Os.26733.2.S1_x_at4/112+33186454..33192700SacI homology domain containing protein, expressed
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006972biological_processhyperosmotic response
GO:0009408biological_processresponse to heat
GO:0005829cellular_componentcytosol
GO:0051082molecular_functionunfolded protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49648.1.S1_s_at--199--3931Chr02:33173861..33173885 (25 bp)
CGGCGAGTACGCGTTCGTGCTCGAC
LOC_Os02g54140
Os.49648.1.S1_s_at--226--3911Chr02:33174326..33174350 (25 bp)
CTGGAAATGGTTGCCGAGAATGGTT
LOC_Os02g54140
Os.49648.1.S1_s_at--350--10031Chr02:33174358..33174382 (25 bp)
TAGAATGTGTTTGTGCTCTGTTCGT
LOC_Os02g54140
Os.49648.1.S1_s_at--491--4811Chr02:33174372..33174396 (25 bp)
GCTCTGTTCGTGTTTCGGTAGTACA
LOC_Os02g54140
Os.49648.1.S1_s_at--1065--10051Chr02:33174390..33174414 (25 bp)
TAGTACAAGTTGTCGCTGATCTGCT
LOC_Os02g54140
Os.49648.1.S1_s_at--743--7231Chr02:33174401..33174425 (25 bp)
GTCGCTGATCTGCTATGTATAAACG
LOC_Os02g54140
Os.49648.1.S1_s_at--780--6891Chr02:33174417..33174441 (25 bp)
GTATAAACGCTGGTGTGACCGTGAA
LOC_Os02g54140
Os.49648.1.S1_s_at--307--7471Chr02:33174429..33174453 (25 bp)
GTGTGACCGTGAAGATGAAGACTAC
LOC_Os02g54140
Os.49648.1.S1_s_at--641--5371Chr02:33174445..33174469 (25 bp)
GAAGACTACGGAAGTAGCTGTTCTT
LOC_Os02g54140
Os.49648.1.S1_s_at--41--6971Chr02:33174458..33174482 (25 bp)
GTAGCTGTTCTTTTGTGTAGGATCA
LOC_Os02g54140
Os.49648.1.S1_s_at--1144--10411Chr02:33174489..33174513 (25 bp)
TTATGTCAAATCTCGTTCGTGAACG
LOC_Os02g54140
Target Sequence 
CGGCGAGTACGCGTTCGTGCTCGACGTCCCTGGNCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGC
TGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGNGNGAGGAGGAGGAAGGGGAGTNCAAGTACATCCGC
CTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGC
GCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAAGTCCGTCCAGGTCA
CCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGCGGTAGTAGAAGCTGGAAATGGTTGCCGAGAATGG
TTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTG
GTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGT
GAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49648.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis