Browse Element(s) Details


OsAffx.12636.1.S1_at

Description tigr:9630.m05376
TID=OsAffx.12636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5423011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54230OsAffx.12636.1.S1_at11/112+33240246..33241154hypothetical protein
LOC_Os02g54240OsAffx.24862.1.S1_at11/112+33243932..33245233F-box domain containing protein
LOC_Os02g54254Os.13781.1.S1_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.13781.1.S2_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.52005.1.S1_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.15865.1.A1_at2/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12636.1.S1_at--515--3331Chr02:33241078..33241102 (25 bp)
CACTGGGACGAATCGATGGCGTCAA
LOC_Os02g54230
OsAffx.12636.1.S1_at--8--531Chr02:33241067..33241091 (25 bp)
ATCGATGGCGTCAACGTTGGAGAAC
LOC_Os02g54230
OsAffx.12636.1.S1_at--1049--2551Chr02:33241055..33241079 (25 bp)
AACGTTGGAGAACCCGCTGAAGCGG
LOC_Os02g54230
OsAffx.12636.1.S1_at--472--8251Chr02:33241029..33241053 (25 bp)
GGCAGCGGCTTCGAGCTCGAGTCTC
LOC_Os02g54230
OsAffx.12636.1.S1_at--693--10591Chr02:33241020..33241044 (25 bp)
TTCGAGCTCGAGTCTCGGGCCCCGT
LOC_Os02g54230
OsAffx.12636.1.S1_at--951--4591Chr02:33240972..33240996 (25 bp)
GCGACTGCGAACTCGCCGTTGCCAG
LOC_Os02g54230
OsAffx.12636.1.S1_at--13--9631Chr02:33240940..33240964 (25 bp)
TCATGAAGATCAATGCGGCGACGCA
LOC_Os02g54230
OsAffx.12636.1.S1_at--823--3111Chr02:33240303..33240327 (25 bp)
AATATACTCGTGTTGTGTAAGGCTC
LOC_Os02g54230
OsAffx.12636.1.S1_at--1009--1991Chr02:33240298..33240322 (25 bp)
ACTCGTGTTGTGTAAGGCTCTTAGC
LOC_Os02g54230
OsAffx.12636.1.S1_at--721--911Chr02:33240284..33240308 (25 bp)
AGGCTCTTAGCCATACAAGCTGCAG
LOC_Os02g54230
OsAffx.12636.1.S1_at--299--1691Chr02:33240276..33240300 (25 bp)
AGCCATACAAGCTGCAGCTACTGTG
LOC_Os02g54230
Target Sequence 
CACTGGGACGAATCGATGGCGTCAACGTTGGAGAACCCGCTGAAGCGGCGGCAGCGGCTTCGAGCTCGAGTCTCGGGCCC
CGTCGGCGCCACGCTGTCCGTGTCCCGCGACTGCGAACTCGCCGTTGCCAGCGCCAACTCATGAAGATCAATGCGGCGAC
GCAACAGGAGGAATCGGCGGCGCGGGGGGTAATATACTCGTGTTGTGTAAGGCTCTTAGCCATACAAGCTGCAGCTACTG
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis