Browse Element(s) Details


Os.4183.1.S1_a_at

Description gb:AB028130.1
DB_XREF= gi:4996641
TID=Os.4183.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4183 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for Dof zinc finger protein, complete cds.
PROD=Dof zinc finger protein
FL= gb:AB028130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4520011/11dof zinc finger protein, putative, expressed
LOC_Os02g539902/11cyclin, putative, expressed
LOC_Os10g226101/11hypothetical protein
LOC_Os09g295501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45170Os.20202.1.S1_at11/112+27410684..27416088expressed protein
LOC_Os02g45180OsAffx.2963.1.S1_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45180OsAffx.2963.1.S1_s_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45200Os.4183.1.S1_a_at11/112+27429834..27432818dof zinc finger protein, putative, expressed
LOC_Os02g45210Os.40360.1.S1_x_at1/112+27452714..27453586expressed protein
LOC_Os02g45220NANA2+27454672..27455115hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009639biological_processresponse to red or far red light
GO:0009845biological_processseed germination
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4183.1.S1_a_at--21--2473Chr02:33051779..33051803 (25 bp)
AACAAGCTCAGACCGTGCTCGGTTT
LOC_Os02g53990
Os.4183.1.S1_a_at--1146--9431Chr02:27430632..27430656 (25 bp)
TCGGTTTCTCCCTGGACACGCACGG
LOC_Os02g45200
Os.4183.1.S1_a_at--499--8372Chr10:11411348..11411372 (25 bp)
GGCGATCATCAGTACGACCACGGCA
LOC_Os10g22610
Os.4183.1.S1_a_at--504--9611Chr02:27430419..27430443 (25 bp)
TCATCGGTGGCCATGAGGCCCCAGG
LOC_Os02g45200
Os.4183.1.S1_a_at--1056--6211Chr02:27430405..27430429 (25 bp)
GAGGCCCCAGGGTTCTGGAATAGCA
LOC_Os02g45200
Os.4183.1.S1_a_at--974--291Chr02:27430386..27430410 (25 bp)
ATAGCAGCATGATCGGCAACGGCAG
LOC_Os02g45200
Os.4183.1.S1_a_at--759--2891Chr02:27430329..27430353 (25 bp)
AAGGTGGTGCGAGCTGCTACTGCTT
LOC_Os02g45200
Os.4183.1.S1_a_at--1112--855Chr02:33051868..33051891 (24 bp)
ATGGCTCATGCATGCACGCGTGGTG
LOC_Os02g53990
Os.4183.1.S1_a_at--764--3353Chr10:11411165..11411189 (25 bp)
CACGCGTGGTGGTCAGCAGCTAGCA
NONE
Os.4183.1.S1_a_at--758--5053Chr10:11411137..11411174 (25 bp)
GCAGCTAGCAGCATGTGGAGATAGA
NONE
Os.4183.1.S1_a_at--742--351Chr02:27430206..27430230 (25 bp)
ATAAGCCTGTGGTGATTAGTGTTAC
LOC_Os02g45200
Target Sequence 
AACAAGCTCAGACCGTGCTCGGTTTCTCCCTGGACACGCACGGCGCGGGTGCAGGCGGCGGCTCCGGGGTGTTCGGCGCG
TGCAGCGCTGGGTTGCAAGAGAGCGCGGCGGGCAGGTTGCTGTTCCCCTTCGAGGACCTGAAGCCGGTGGTGAGCGCCGC
GGCTGGCGACGCGAACAGCGGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGTGGCGGCGGCGTCATCGGTG
GCCATGAGGCCCCAGGGTTCTGGAATAGCAGCATGATCGGCAACGGCAGCAGCAATGGCGGCGGCGGCGGCGGTTCTTGG
TAAGGTGGTGCGAGCTGCTACTGCTTGCCCGCCGCCGCCATGCATGGCTCATGCATGCACGCGTGGTGGTCAGCAGCTAG
CAGCATGTGGAGATAGAGAAACGAGATAGAGACAAGGGGGGTTAATAAGCCTGTGGTGATTAGTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4183.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis