Browse Element(s) Details


Os.20202.1.S1_at

Description gb:AK073183.1
DB_XREF= gi:32983206
TID=Os.20202.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033009O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033009O22, full insert sequence.
FL= gb:AK073183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45170Os.20202.1.S1_at11/112+27410684..27416088expressed protein
LOC_Os02g45180OsAffx.2963.1.S1_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45180OsAffx.2963.1.S1_s_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45200Os.4183.1.S1_a_at11/112+27429834..27432818dof zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20202.1.S1_at--158--6251Chr02:27415413..27415437 (25 bp)
GATGGAGCTCCGTGATGGCAAGATC
LOC_Os02g45170
Os.20202.1.S1_at--493--2811Chr02:27415432..27415456 (25 bp)
AAGATCATGGCTCGATTTCTCGTCG
LOC_Os02g45170
Os.20202.1.S1_at--149--2091Chr02:27415568..27415592 (25 bp)
ACATATTCTTGTCACTCGTTCAGTT
LOC_Os02g45170
Os.20202.1.S1_at--480--2451Chr02:27415601..27415625 (25 bp)
AAAATAGCCTCAACCGATCCTCTGA
LOC_Os02g45170
Os.20202.1.S1_at--527--7671Chr02:27415652..27415676 (25 bp)
GGGTTCCATCGTTTGCAGAGCATCA
LOC_Os02g45170
Os.20202.1.S1_at--508--4971Chr02:27415671..27415695 (25 bp)
GCATCAGCAATCTCCAATATCAGTG
LOC_Os02g45170
Os.20202.1.S1_at--358--251Chr02:27415687..27415711 (25 bp)
ATATCAGTGCCGGTTGGCCTTGCAG
LOC_Os02g45170
Os.20202.1.S1_at--447--6591Chr02:27415793..27415817 (25 bp)
GATTGCCGCTGGAAGTTGACTACCA
LOC_Os02g45170
Os.20202.1.S1_at--1120--6512Chr02:27415884..27415908 (25 bp)
GATATTCTCTCCATTTAGTGTTGGT
LOC_Os02g45170
Os.20202.1.S1_at--463--4991Chr02:27415984..27416008 (25 bp)
GCATGCTGTTCTGTGTGTAGTGATT
LOC_Os02g45170
Os.20202.1.S1_at--938--10731Chr02:27416057..27416081 (25 bp)
TTGCATCGTCATGGCTGGTTTTTTC
LOC_Os02g45170
Target Sequence 
GATGGAGCTCCGTGATGGCAAGATCATGGCTCGATTTCTCGTCGAGGCAAACAAGAATGTTACTANGATGGACATATTCT
TGTCACTCGTTCAGTTACTTCAGCAAAATAGCCTCAACCGATCCTCTGACCAGATATCAAAGGTCATTAGGAATGGGGTT
CCATCGTTTGCAGAGCATCAGCAATCTCCAATATCAGTGCCGGTTGGCCTTGCAGATAGATGACAGATTAACAGTGACCA
CAGACACTTGGATTAGATCAGATTAGGAGGCATCAACTGAAAACATTCAGATTGCTGATTGCCGCTGGAAGTTGACTACC
AAGGGGTAAGGTTTGTTAGATATGATAAGTTTNGAGGATGTAAAATATGTGCATTGCNTCATTAAGAGATATTCTCTCCA
TTTAGTGTTGGTCATTCCANGATGTACAAATACTAAACAAATTTAGGAATCAGGCTTGTAATCAGAATTCAGGACACTGT
TGTGGGTGCATGCTGTTCTGTGTGTAGTGATTTGTTGACTTGTTTTTTCCCCTTTGGTGTGCNAATGACTTCCCTAATAA
TTGCATCGTCATGGCTGGTTTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis