Browse Element(s) Details


OsAffx.2963.1.S1_s_at

Description tigr:9630.m04381
TID=OsAffx.2963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ORMDL family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4518011/11ORMDL family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45170Os.20202.1.S1_at11/112+27410684..27416088expressed protein
LOC_Os02g45180OsAffx.2963.1.S1_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45180OsAffx.2963.1.S1_s_at11/112+27417044..27421720ORMDL family protein, expressed
LOC_Os02g45200Os.4183.1.S1_a_at11/112+27429834..27432818dof zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2963.1.S1_s_at--464--9851Chr02:27421258..27421282 (25 bp)
TACAGACTACCAACATCCTATGCTC
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--279--5031Chr02:27421304..27421328 (25 bp)
GCAGTGCTCGTGGTCGCTAAACTAC
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--614--2031Chr02:27421371..27421395 (25 bp)
ACTAGGCAGCAGGATCCTTCAGCAG
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--1021--1511Chr02:27421391..27421415 (25 bp)
AGCAGACATCTACCTATCTTCCTTT
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--527--3691Chr02:27421404..27421428 (25 bp)
CTATCTTCCTTTCCAGTTCATCTGG
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--963--6731Chr02:27421419..27421443 (25 bp)
GTTCATCTGGCTCATCAGAGTATCA
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--502--1611Chr02:27421467..27421491 (25 bp)
AGCTGATGGGTTGTGATCGTTGTAT
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--715--6211Chr02:27421505..27421529 (25 bp)
GAGGCTGAAAACGATGCTGCTGTAT
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--865--4771Chr02:27421520..27421544 (25 bp)
GCTGCTGTATATCTGATGTACACGA
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--1002--91Chr02:27421545..27421569 (25 bp)
ATTCTGTAGACTCTTAACGCTGCTA
LOC_Os02g45180
OsAffx.2963.1.S1_s_at--991--2591Chr02:27421560..27421584 (25 bp)
AACGCTGCTATATGCTTTGATACAA
LOC_Os02g45180
Target Sequence 
TACAGACTACCAACATCCTATGCTCTTCCTCAACACCCTTGCAGTCGCAGTGCTCGTGGTCGCTAAACTACCGAACATGC
ACAAGGTCCGGATTTTTGGAATTAATGCTGGGAACTAGGCAGCAGGATCCTTCAGCAGACATCTACCTATCTTCCTTTCC
AGTTCATCTGGCTCATCAGAGTATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAG
ATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTT
GATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2963.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis