Browse Element(s) Details


Os.8276.1.S1_at

Description gb:AK108963.1
DB_XREF= gi:32994172
TID=Os.8276.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-178-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D05, full insert sequence.
FL= gb:AK108963.1 gb:AK111202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4516011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45170Os.20202.1.S1_at11/112+27410684..27416088expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8276.1.S1_at--1106--1291Chr02:27386364..27386388 (25 bp)
AGATGAAAGTGCACCCGCTGAACGT
LOC_Os02g45160
Os.8276.1.S1_at--1020--5791Chr02:27386326..27386350 (25 bp)
GACGCGTCGACACATGAAAGCCAGA
LOC_Os02g45160
Os.8276.1.S1_at--451--5711Chr02:27386303..27386327 (25 bp)
GACTACAACGAAGCACCCTGAACAG
LOC_Os02g45160
Os.8276.1.S1_at--875--2371Chr02:27386265..27386289 (25 bp)
AAACGTCCATCAAATCAAACCGCAC
LOC_Os02g45160
Os.8276.1.S1_at--196--71Chr02:27386191..27386215 (25 bp)
ATTGAATCTAAACTGGCTGAGCCAC
LOC_Os02g45160
Os.8276.1.S1_at--1086--3671Chr02:27386162..27386186 (25 bp)
CTTTGCTAGCTTCTTCTGGTGATTA
LOC_Os02g45160
Os.8276.1.S1_at--326--5251Chr02:27386106..27386130 (25 bp)
GAATCTTGGCAACTTCATACCACGG
LOC_Os02g45160
Os.8276.1.S1_at--748--291Chr02:27386090..27386114 (25 bp)
ATACCACGGCTTACACGACGAATAA
LOC_Os02g45160
Os.8276.1.S1_at--664--3111Chr02:27386071..27386095 (25 bp)
GAATAAAACCGGCTTACCACTGTCA
LOC_Os02g45160
Os.8276.1.S1_at--411--2851Chr02:27386043..27386067 (25 bp)
AAGTCGGCATGTATCGTCGCATTCA
LOC_Os02g45160
Os.8276.1.S1_at--1102--8271Chr02:27385951..27385975 (25 bp)
GGCATATGAGCTCAGATGTTCCCCT
LOC_Os02g45160
Target Sequence 
AGATGAAAGTGCACCCGCTGAACGTGCCGGATGATCACGACGCGTCGACACATGAAAGCCAGACTACAACGAAGCACCCT
GAACAGGTCTAAACTTTAAAAACGTCCATCAAATCAAACCGCACAAAATCAACCAGCGGGACGAGTCAGACCGGAAGAAC
ACACGAATACATGATTGAATCTAAACTGGCTGAGCCACCGCTCTTTGCTAGCTTCTTCTGGTGATTAACAGAATAACTCT
ATCGATTTACAGTGGAGAGAATCTTGGCAACTTCATACCACGGCTTACACGACGAATAAAACCGGCTTACCACTGTCATA
AAAGTCGGCATGTATCGTCGCATTCATGATGTACTACTACCTTGTACATATATTAACAGAACATTATTTGATATTTTTAC
AGGAACACTGCAAGGCATATGAGCTCAGATGTTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis