Browse Element(s) Details


Os.9917.1.S1_s_at

Description gb:AU089792
DB_XREF= gi:7652234
DB_XREF=AU089792
CLONE=S16124
TID=Os.9917.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9917 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171629.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4512011/11Transcription factor S-II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9917.1.S1_s_at--532--3931Chr02:27363543..27363567 (25 bp)
CGGCGAGCGGGCGACACAGGTGACA
LOC_Os02g45120
Os.9917.1.S1_s_at--889--8951Chr02:27363563..27363587 (25 bp)
TGACAGGCGAGGTGAAACACACCGA
LOC_Os02g45120
Os.9917.1.S1_s_at--196--8551Chr02:27365627..27365651 (25 bp)
TGGAGAAGCATACTACAGGCAGATG
LOC_Os02g45120
Os.9917.1.S1_s_at--870--6571Chr02:27365654..27365678 (25 bp)
GATTCGATCAGCTGATGAGCCAATG
LOC_Os02g45120
Os.9917.1.S1_s_at--280--1611Chr02:27365663..27365687 (25 bp)
AGCTGATGAGCCAATGTCTACATTT
LOC_Os02g45120
Os.9917.1.S1_s_at--945--5851Chr02:27365670..27365694 (25 bp)
GAGCCAATGTCTACATTTTACAAGT
LOC_Os02g45120
Os.9917.1.S1_s_at--615--3731Chr02:27365680..27365704 (25 bp)
CTACATTTTACAAGTGTTGCAGAGA
LOC_Os02g45120
Os.9917.1.S1_s_at--45--7971Chr02:27365722..27365746 (25 bp)
GGAGGGAGGACTGACTTTAGTAATA
LOC_Os02g45120
Os.9917.1.S1_s_at--168--6191Chr02:27365727..27365751 (25 bp)
GAGGACTGACTTTAGTAATATTTCT
LOC_Os02g45120
Os.9917.1.S1_s_at--1125--7471Chr02:27365760..27365784 (25 bp)
GTGTGTGGATATTTTTCCTGCTAAA
LOC_Os02g45120
Os.9917.1.S1_s_at--89--7951Chr02:27365766..27365790 (25 bp)
GGATATTTTTCCTGCTAAAACTATG
LOC_Os02g45120
Target Sequence 
CGGCGAGCGGGCGACACAGGTGACAGGCGAGGTGAAACACACCGAGAGCTACATGNCCCAAGGTGNCCAAAATGGAGAAG
CATACTACAGGCAGATGNCAGATTCGATCAGCTGATGAGCCAATGTCTACATTTTACAAGTGTTGCAGAGAAGAATGCCA
ATTTGATTNGGAGGGAGGACTGACTTTAGTAATATTTCTTNGTTTAATNGTGTGTGGATATTTTTCCTGCTAAAACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9917.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis