Browse Element(s) Details


OsAffx.12501.1.S1_at

Description tigr:9630.m04369
TID=OsAffx.12501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4508011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45054Os.17568.1.S1_at11/112+27310155..27319782Zinc finger, C2H2 type family protein, expressed
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12501.1.S1_at--722--1071Chr02:27341909..27341933 (25 bp)
AGGGCTTACCATATCTCACGTTAAA
LOC_Os02g45080
OsAffx.12501.1.S1_at--1012--8231Chr02:27342063..27342087 (25 bp)
GGCACACGGCATGGCATTGGACAAA
LOC_Os02g45080
OsAffx.12501.1.S1_at--122--6511Chr02:27342398..27342422 (25 bp)
GATATGCAGCCACAGCTACATCTGA
LOC_Os02g45080
OsAffx.12501.1.S1_at--1034--471Chr02:27342417..27342441 (25 bp)
ATCTGAAGCAGCACTCATTCGGCAG
LOC_Os02g45080
OsAffx.12501.1.S1_at--365--2931Chr02:27342458..27342482 (25 bp)
AAGGAATTCATGTGCCCACCCATAA
LOC_Os02g45080
OsAffx.12501.1.S1_at--331--931Chr02:27342705..27342729 (25 bp)
AGGCACCCGGTACTTCATCGATGAT
LOC_Os02g45080
OsAffx.12501.1.S1_at--599--1271Chr02:27342771..27342795 (25 bp)
AGATCAACACGATGCTGCAGCTGCC
LOC_Os02g45080
OsAffx.12501.1.S1_at--509--4451Chr02:27342830..27342854 (25 bp)
GCCTTCATCAGGCACTGGGATTTTG
LOC_Os02g45080
OsAffx.12501.1.S1_at--1099--6171Chr02:27342871..27342894 (24 bp)
GAGGAGCCCTTTATGGTACACCAGA
LOC_Os02g45080
OsAffx.12501.1.S1_at--932--2311Chr02:27343994..27344291 (25 bp)
AAAGTAGATTCTTCATGTCCCTCGT
LOC_Os02g45080
OsAffx.12501.1.S1_at--64--9311Chr02:27344284..27344308 (25 bp)
TCCCTCGTCATGGTGCTATTACTAA
LOC_Os02g45080
Target Sequence 
AGGGCTTACCATATCTCACGTTAAAAGTCACCTACAGATGTACAGAGGCACACGGCATGGCATTGGACAAAACGATATGC
AGCCACAGCTACATCTGAAGCAGCACTCATTCGGCAGTGATGAGCAGAGCCCCAAGGAATTCATGTGCCCACCCATAAAA
AGGGCCAAGGTAGGGACAGAAGCTTCAGGCAAATACAGATGCATGGAAGGGAGCAGTGACATGAGGAGTAGTGCTCCTCC
TGCAGGCACCCGGTACTTCATCGATGATTGTATGCGACTGCAAGAAGTGTCCATGGATAGGAGGAGATCAGATCAACACG
ATGCTGCAGCTGCCGCTCGTGCTCGTGCTCCTGCTGCTGCTGCTTCAAGCCTTCATCAGGCACTGGGATTTTGGGTGCAG
GGAAGAAGAGAGGAGCCCTTTATGGTACACCAGATTAGTAAACCCAAAGCACATCAACTGAACCATATGGTCAGGAACAT
GAAGATATCTTGCAAGGAGAACCACGAAAGTAGATTCTTCATGTCCCTCGTCATGGTGCTATTACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis