Browse Element(s) Details


Os.18183.1.S1_at

Description gb:AK073845.1
DB_XREF= gi:32983868
TID=Os.18183.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067P07, full insert sequence.
FL= gb:AK073845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4513011/11protein kinase family protein, putative, expressed
LOC_Os06g189001/11embryogenesis transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18183.1.S1_at--548--7691Chr02:27366747..27366771 (25 bp)
GGGTCAGACATTTCTGTTCAGCTTG
LOC_Os02g45130
Os.18183.1.S1_at--371--6752Chr06:10740699..10740833 (24 bp)
GTTCAGCTTGATGGGAGTTCCAAAA
LOC_Os06g18900
Os.18183.1.S1_at--915--5431Chr02:27366650..27366674 (25 bp)
GAACCGATAAACTGGGCTGCAGACA
LOC_Os02g45130
Os.18183.1.S1_at--672--2711Chr02:27366578..27366602 (25 bp)
AAGCATCACATCACTCGGAGTTGGT
LOC_Os02g45130
Os.18183.1.S1_at--907--3971Chr02:27366550..27366574 (25 bp)
CGGTGCATCGGTTTCAATTACTGAA
LOC_Os02g45130
Os.18183.1.S1_at--264--7091Chr02:27366385..27366409 (25 bp)
GTCAAGTTTTGTGTTTCATCTGAAC
LOC_Os02g45130
Os.18183.1.S1_at--1121--6271Chr02:27366340..27366364 (25 bp)
GATGTTCATGTTCCAGCTTCCTGGT
LOC_Os02g45130
Os.18183.1.S1_at--1002--1531Chr02:27366326..27366350 (25 bp)
AGCTTCCTGGTTCAACATTTCTTGT
LOC_Os02g45130
Os.18183.1.S1_at--766--911Chr02:27366266..27366290 (25 bp)
AGTTTAAACGTTGCTGTAGTCTGCA
LOC_Os02g45130
Os.18183.1.S1_at--1098--6931Chr02:27366251..27366275 (25 bp)
GTAGTCTGCAATGCTGTAAAGCCAG
LOC_Os02g45130
Os.18183.1.S1_at--174--2671Chr02:27366210..27366234 (25 bp)
AAGCCGTTTGGCAAGAGTTTACAGC
LOC_Os02g45130
Target Sequence 
GGGTCAGACATTTCTGTTCAGCTTGATGGGAGTTCCAAAAGTCTTAGTGAGTATGGCGTTGACGNATACAGGACACTGGA
ATGTGGTGCGTACAAAGGAACCGATAAACTGGGCTGCAGACANCCGTTAAGTAATGGTNCAAGTAATTTTGCAATCTTNC
AGATGGATCAAGCATCACATCACTCGGAGTTGGTGANCGGTGCATCGGTTTCAATTACTGAAAATCGAGATGTGTTAAAT
GGAGAGCTTGGTCTGNATTGAAGCTCAGTACGAGCAATGGTTTCGTGAATTAACAAGGATGCGGGAAGNAGCTTTGGAAG
GAGCCCGGAAGAAGTGGTTACCAGATAAATGATGATGTATAAAGTCAAGTTTTGTGTTTCATCTGAACATCATAAGAAAG
AATGTTCAGATGTTCATGTTCCAGCTTCCTGGTTCAACATTTCTTGTGTTTCATACATAATTGANCAACNTTNNNAATTT
TTAGTTTAAACGTTGCTGTAGTCTGCAATGCTGTAAAGCCAGCTTGTTGGTAATTATTAAGCCGTTTGGCAAGAGTTTAC
AGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis