Browse Element(s) Details


Os.55719.1.S1_at

Description gb:AK108650.1
DB_XREF= gi:32993859
TID=Os.55719.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C05, full insert sequence.
FL= gb:AK108650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4515011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55719.1.S1_at--406--7171Chr02:27382531..27382555 (25 bp)
GTCTCCTCGGCGATGCGTGTACGAG
LOC_Os02g45150
Os.55719.1.S1_at--122--5771Chr02:27382724..27382748 (25 bp)
GACGTCGCTGGCAGAGGTCATCAGC
LOC_Os02g45150
Os.55719.1.S1_at--146--1331Chr02:27382736..27382760 (25 bp)
AGAGGTCATCAGCACTTCACCGTTG
LOC_Os02g45150
Os.55719.1.S1_at--587--6671Chr02:27382757..27382781 (25 bp)
GTTGCTCTGCTGCTAAGCGAGGATC
LOC_Os02g45150
Os.55719.1.S1_at--445--8391Chr02:27382835..27382859 (25 bp)
GGCCGACGATGCTGACGGTACCGAT
LOC_Os02g45150
Os.55719.1.S1_at--1102--6971Chr02:27382852..27382876 (25 bp)
GTACCGATAAGCCAGAAGCCGAGGT
LOC_Os02g45150
Os.55719.1.S1_at--1107--7511Chr02:27382875..27382899 (25 bp)
GTGGCACGTTCGGACGAGTCACCGC
LOC_Os02g45150
Os.55719.1.S1_at--24--2271Chr02:27382909..27382933 (25 bp)
AAATCTGGCAAACACGCACCTTGAA
LOC_Os02g45150
Os.55719.1.S1_at--963--7031Chr02:27382967..27382991 (25 bp)
GTACAAGCTGCTAGTAGGTGTCAAA
LOC_Os02g45150
Os.55719.1.S1_at--356--4991Chr02:27383005..27383029 (25 bp)
GCAGGATTCCAATTTCAAAACCGTG
LOC_Os02g45150
Os.55719.1.S1_at--423--9111Chr02:27383044..27383068 (25 bp)
TGCTGCACCAGTACGTATCTACATG
LOC_Os02g45150
Target Sequence 
GTCTCCTCGGCGATGCGTGTACGAGGGTTGGCGCGTGGTGCGCGCGGGTGCTCAAGGAGGCGTCCGCCTGCGTCGCCACG
ATGACGACGTCCCGGGGCCTTGGCTTCGCCGTGGCGGAGATGGACGCCGCCGTGCGCGAGCTGCAGAGCGACCTGCGGGC
TCTCCCGCCCATCCTAGCCGAGGAAGCGTCGGAGACGTCGCTGGCAGAGGTCATCAGCACTTCACCGTTGCTCTGCTGCT
AAGCGAGGATCGAGGGCGTCGTCCACGCCGTCGGCACGCTGGCGACACTCGCGGGGTTCAAGCCGGCCGACGATGCTGAC
GGTACCGATAAGCCAGAAGCCGAGGTGGCACGTTCGGACGAGTCACCGCCTCACCGGAAAATCTGGCAAACACGCACCTT
GAACAGAGTGAACATTTTAGCAAGTGACAAAAAGGGGTACAAGCTGCTAGTAGGTGTCAAAGCAGAACATTTTAGCAGGA
TTCCAATTTCAAAACCGTGGTGCAGAGGTGCAGTGCTGCACCAGTACGTATCTACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis