Browse Element(s) Details


Os.50517.1.S1_at

Description gb:AK121576.1
DB_XREF= gi:37991199
TID=Os.50517.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036H24, full insert sequence.
FL= gb:AK121576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g451502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50517.1.S1_at--742--7171Chr10:3525545..3525569 (25 bp)
GTCGTTTGACCTCCCGGTTGCTCAG
NONE
Os.50517.1.S1_at--428--4211Chr10:3525621..3525645 (25 bp)
CCACCGGCCGTGAGTTAGGCAACAA
NONE
Os.50517.1.S1_at--1160--5111Chr10:3525639..3525663 (25 bp)
GCAACAAACTGCCAAGGCGTCGCTG
NONE
Os.50517.1.S1_at--448--4471Chr10:3525694..3525718 (25 bp)
GCCGGTTGGTCCTGGTTGATTGCCA
NONE
Os.50517.1.S1_at--849--5711Chr10:3525760..3525784 (25 bp)
GACTGAATGTGATGTTGACTTGCTA
NONE
Os.50517.1.S1_at--934--10752Chr10:3525774..3525798 (25 bp)
TTGACTTGCTATGAACTGTGATTTG
NONE
Os.50517.1.S1_at--217--3892Chr10:3525789..3525813 (25 bp)
CTGTGATTTGGTGAATTAGAGCTAT
NONE
Os.50517.1.S1_at--808--5471Chr10:3525814..3525838 (25 bp)
GAACTATGATTTGTGATACTGCTAA
NONE
Os.50517.1.S1_at--641--8671Chr10:3525825..3525849 (25 bp)
TGTGATACTGCTAATTGGTGAATTT
NONE
Os.50517.1.S1_at--485--7771Chr10:3525841..3525865 (25 bp)
GGTGAATTTGAACTATGAACTGCGA
NONE
Os.50517.1.S1_at--807--5472Chr10:3525850..3525874 (25 bp)
GAACTATGAACTGCGATTTGTGAAT
NONE
Target Sequence 
GTCGTTTGACCTCCCGGTTGCTCAGTCCATGGAGAGGCGGAGGGTGGAGGTGCCGTCACGCCGAGGCACCACGCCGCCAC
CGGCCGTGAGTTAGGCAACAAACTGCCAAGGCGTCGCTGGCTGCCGGCGCCGGGAGCCCAAGGCCCCTGGCCGGTTGGTC
CTGGTTGATTGCCACTCCCTCCCCCTCGCCATTTGTGAATCAGTGGTTAGTGGATGACTGAATGTGATGTTGACTTGCTA
TGAACTGTGATTTGGTGAATTAGAGCTATGAACTATGATTTGTGATACTGCTAATTGGTGAATTTGAACTATGAACTGCG
ATTTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis