Browse Element(s) Details


Os.26438.1.S1_at

Description gb:AK059611.1
DB_XREF= gi:32969629
TID=Os.26438.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F08, full insert sequence.
FL= gb:AK099179.1 gb:AK059611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4512010/11Transcription factor S-II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein
LOC_Os02g45150Os.55719.1.S1_at11/112+27381057..27383071expressed protein
LOC_Os02g45150Os.50517.1.S1_at2/112+27381057..27383071expressed protein
LOC_Os02g45160Os.8276.1.S1_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os02g45160Os.8276.1.S2_at11/112+27384978..27388319Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26438.1.S1_at--123--1071Chr02:27364126..27364150 (25 bp)
AGGGTTTAGCGTCGGATCCAGTCTC
LOC_Os02g45120
Os.26438.1.S1_at--594--6351Chr02:27364140..27364164 (25 bp)
GATCCAGTCTCCACCGGAGCGCGGG
LOC_Os02g45120
Os.26438.1.S1_at--991--1871Chr02:27364277..27364299 (23 bp)
ACGTCTGCCCCGTCAAAAACAAGAT
LOC_Os02g45120
Os.26438.1.S1_at--299--5311Chr02:27364435..27364459 (25 bp)
GAAGGAGGTGGAGCCCATCTTCAGC
LOC_Os02g45120
Os.26438.1.S1_at--100--7731Chr02:27364441..27364465 (25 bp)
GGTGGAGCCCATCTTCAGCGACAGC
LOC_Os02g45120
Os.26438.1.S1_at--1027--5791Chr02:27364466..27364490 (25 bp)
GACGCCATGAAGAATGCCCCTAAGA
LOC_Os02g45120
Os.26438.1.S1_at--1018--9771NONE
TAAGACCACCACTACATGCCCAAGG
NONE
Os.26438.1.S1_at--582--2011Chr02:27365605..27365628 (24 bp)
ACTACATGCCCAAGGTGCCAAAATG
LOC_Os02g45120
Os.26438.1.S1_at--353--1751Chr02:27365803..27365827 (25 bp)
ACCTTTTGTAATCAGCTCATGCCGC
LOC_Os02g45120
Os.26438.1.S1_at--817--3751Chr02:27365818..27365842 (25 bp)
CTCATGCCGCAGCAAAGAGCCAAAG
LOC_Os02g45120
Os.26438.1.S1_at--53--4351Chr02:27365906..27365930 (25 bp)
CCAAAGTCCCAACCTATCGTGGTGT
LOC_Os02g45120
Target Sequence 
AGGGTTTAGCGTCGGATCCAGTCTCCACCGGAGCGCGGGGCGGCGGATTCCAAGGCGGCGATGGAGTTCTGCCCGGGGTG
CGGGATGCTGCTGCAGATCCAGCCGGCCACCGGCGGGAACCGCCTGCGCTTNTACTGCCCCACCTGCCCCTACGTCTGCC
CCGTCAAAAACAAGATCGTGAAGAAGGCGAGACTNGTGAAGAAGGAGGTGGAGCCCATCTTCAGCGACAGCGACGCCATG
AAGAATGCCCCTAAGACCACCACTACATGCCCAAGGTGCCAAAATGGAGAAGCATACTACAGGCAGATGCAGATTCGATC
AGCTGATGAGCCAATGTCTACATTTTACAAGTGTTGCAGAGAAGAATGCCAATTTGATTGGAGGGAGGACTGACTTTAGT
AATATTTCTTGTTTAATGTGTGTGGATATTTTTCCTGCTAAAACTATGTAATCATATGAAACCTTTTGTAATCAGCTCAT
GCCGCAGCAAAGAGCCAAAGAAAACTTACACANGGGAAACCAATGCACCACAAAATATCGTGATATTTTGGTCTAGGCGT
GTGCCAAAGTCCCAACCTATCGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis