Browse Element(s) Details


Os.9264.1.S1_at

Description gb:AK064365.1
DB_XREF= gi:32974383
TID=Os.9264.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C02, full insert sequence.
FL= gb:AK101845.1 gb:AK064365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4509011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed
LOC_Os02g45120Os.9917.1.S1_s_at11/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45120Os.26438.1.S1_at10/112+27363273..27365942Transcription factor S-II family protein, expressed
LOC_Os02g45130Os.18183.1.S1_at11/112+27366205..27370892protein kinase family protein, putative, expressed
LOC_Os02g45140OsAffx.2962.1.S1_at10/112+27372081..27373796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9264.1.S1_at--484--5711Chr02:27346725..27346749 (25 bp)
GACTAAGCCTCGTCTCTGTGTCAAG
LOC_Os02g45090
Os.9264.1.S1_at--148--1471Chr02:27346669..27346693 (25 bp)
AGAAGTGATGCCTCCTTGGTTGATA
LOC_Os02g45090
Os.9264.1.S1_at--3--6451Chr02:27346598..27346622 (25 bp)
GATCAGTCTGCTCATTTCAAGTTTA
LOC_Os02g45090
Os.9264.1.S1_at--64--3231Chr02:27346581..27346605 (25 bp)
CAAGTTTACAACTCTGCGGCAGCTT
LOC_Os02g45090
Os.9264.1.S1_at--725--4691Chr02:27346566..27346590 (25 bp)
GCGGCAGCTTGAATCTTCTATGGTC
LOC_Os02g45090
Os.9264.1.S1_at--304--2371Chr02:27346521..27346545 (25 bp)
AAACCCTTCCATGGTTGCGTGCTGT
LOC_Os02g45090
Os.9264.1.S1_at--679--4731Chr02:27346501..27346525 (25 bp)
GCTGTTCTACGCATCATATCATCTG
LOC_Os02g45090
Os.9264.1.S1_at--1034--1211Chr02:27346411..27346435 (25 bp)
AGTTCGTTCATGCAGCTCTTGGAGG
LOC_Os02g45090
Os.9264.1.S1_at--322--3611Chr02:27346394..27346418 (25 bp)
CTTGGAGGGTACTTCTTGTCGTTAT
LOC_Os02g45090
Os.9264.1.S1_at--959--7791Chr02:27346340..27346364 (25 bp)
GGTCGCTGGCTATTATGGTGTTCTA
LOC_Os02g45090
Os.9264.1.S1_at--868--9871Chr02:27346219..27346243 (25 bp)
TACTTTTTCCCTGCAATCTACTGTG
LOC_Os02g45090
Target Sequence 
GACTAAGCCTCGTCTCTGTGTCAAGGCTTTGGTGCCTGATGCAAAAGCGGCAAAGAAGAAGTGATGCCTCCTTGGTTGAT
ATCAATCAGATGGCACCGTGATGGGCATAATACAGATGATACAATTTGATCAGTCTGCTCATTTCAAGTTTACAACTCTG
CGGCAGCTTGAATCTTCTATGGTCGAGATGGTTTAACAAACATCAAACCCTTCCATGGTTGCGTGCTGTTCTACGCATCA
TATCATCTGTAGTCCCCACCAACTGCTGTTTGGCTGGTTTTGGGTAGGTCAGTGTATAAGTTGCAGCCCTGCAGAGTTCG
TTCATGCAGCTCTTGGAGGGTACTTCTTGTCGTTATTTTTGCATGTTGCGATGTCAAAACCATGAGGTCGCTGGCTATTA
TGGTGTTCTACTGTTTTCTGAACTTTATCTATTATGGCCAGTTCAGACAAAAGCATGCATGTTGCTGAAGAAGCAGCTAC
TGAGATGGCTTTTGTTTCGTCCACCGTACTTTTTCCCTGCAATCTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis