Browse Element(s) Details


Os.17568.1.S1_at

Description gb:AK120603.1
DB_XREF= gi:37990226
TID=Os.17568.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149P10, full insert sequence.
FL= gb:AK120603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4505411/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45040Os.19271.1.S1_at11/112+27291229..27294139retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g45054Os.17568.1.S1_at11/112+27310155..27319782Zinc finger, C2H2 type family protein, expressed
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17568.1.S1_at--84--7271Chr02:27319188..27319212 (25 bp)
GTCCTTCAACGGAGGCAGGATGCAA
LOC_Os02g45054
Os.17568.1.S1_at--977--311Chr02:27319230..27319254 (25 bp)
ATACGTGGCACGTTGGCATCAACAT
LOC_Os02g45054
Os.17568.1.S1_at--566--3091Chr02:27319290..27319314 (25 bp)
AATACAATGCTGTGACTTGTGACAC
LOC_Os02g45054
Os.17568.1.S1_at--794--9831Chr02:27319353..27319377 (25 bp)
TAAAGCCAGCTTTGATGATGATACA
LOC_Os02g45054
Os.17568.1.S1_at--1039--7751Chr02:27319395..27319419 (25 bp)
GGTGAGCAGAAGAGCTTCTCCTAGA
LOC_Os02g45054
Os.17568.1.S1_at--235--10591Chr02:27319410..27319434 (25 bp)
TTCTCCTAGACTCCTACTAATGCAT
LOC_Os02g45054
Os.17568.1.S1_at--472--5331Chr02:27319473..27319497 (25 bp)
GAAGTTAGGCGTTATTACTGCAATA
LOC_Os02g45054
Os.17568.1.S1_at--953--5191Chr02:27319492..27319516 (25 bp)
GCAATATACTATTCTGTTCCTGATA
LOC_Os02g45054
Os.17568.1.S1_at--909--691Chr02:27319600..27319624 (25 bp)
ATGAGACTGTATTATCTTCTTCTTT
LOC_Os02g45054
Os.17568.1.S1_at--202--5691Chr02:27319666..27319690 (25 bp)
GACTTAATTACCCTACTGATCTTTT
LOC_Os02g45054
Os.17568.1.S1_at--1141--10811Chr02:27319698..27319722 (25 bp)
TTGTCCTCTTTCAGTCATTCAGTTA
LOC_Os02g45054
Target Sequence 
GTCCTTCAACGGAGGCAGGATGCAATGATCTCTTAANGCANTATATACGTGGCACGTTGGCATCAACATGCNATGGCAGG
AATAANTTGTTGATTTGCAGGTTNCAATACAATGCTGTGACTTGTGACACATGTGATAGATGTTTTTGCATGCATCCATG
CAAAAGGATAAAGCCAGCTTTGATGATGATACAATCTTAGCNAGAGNCATGGTGAGCAGAAGAGCTTCTCCTAGACTCCT
ACTAATGCATGANGAAGCTAGATCNACAGGAATCATGAGACTTGAGCTGAAGTTAGGCGTTATTACTGCAATATACTATT
CTGTTCCTGATAGATCTTATTGCTAAATTTCATTTGAAAGAATAGGTCTTGCTAAATGTAATTGGGTTAATTGTACTGGA
TCAGGGATAACTGCAATGAGACTGTATTATCTTCTTCTTTCTTTTCTGTCAGACGAATTATAGGTCTGTGGGGGATAATG
AGACTTAATTACCCTACTGATCTTTTCTATTTTTTGTCCTCTTTCAGTCATTCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis