Browse Element(s) Details


OsAffx.6438.1.S1_at

Description tigr:9637.m02594
TID=OsAffx.6438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2930011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein
LOC_Os09g29284Os.54337.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29284OsAffx.6437.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29300OsAffx.6438.1.S1_at11/119+17784709..17785710expressed protein
LOC_Os09g29310OsAffx.6439.1.S1_x_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29310OsAffx.6439.1.S1_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29320Os.47130.4.A1_x_at1/119+17797812..17798138retrotransposon protein, putative, unclassified
LOC_Os09g29330NANA9+17798761..17804713retrotransposon protein, putative, unclassified
LOC_Os09g29340Os.28943.1.S1_x_at2/119+17805337..17807577retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6438.1.S1_at--853--3911Chr09:17785274..17785298 (25 bp)
CGGCCACGTGGGTCAGGTTCTCCGC
LOC_Os09g29300
OsAffx.6438.1.S1_at--709--1911Chr09:17785269..17785293 (25 bp)
ACGTGGGTCAGGTTCTCCGCGCGCC
LOC_Os09g29300
OsAffx.6438.1.S1_at--403--2611Chr09:17785170..17785194 (25 bp)
AACCCGCACGTCATCGCCGAGCTAT
LOC_Os09g29300
OsAffx.6438.1.S1_at--783--1491Chr09:17785085..17785109 (25 bp)
AGCACAACGGCCTCATCTGGGAGCT
LOC_Os09g29300
OsAffx.6438.1.S1_at--243--2211Chr09:17785082..17785106 (25 bp)
ACAACGGCCTCATCTGGGAGCTCAT
LOC_Os09g29300
OsAffx.6438.1.S1_at--684--4451Chr09:17785076..17785100 (25 bp)
GCCTCATCTGGGAGCTCATCCGGCT
LOC_Os09g29300
OsAffx.6438.1.S1_at--646--1571Chr09:17785064..17785088 (25 bp)
AGCTCATCCGGCTCGCCGAAGAAGA
LOC_Os09g29300
OsAffx.6438.1.S1_at--1105--5851Chr09:17785026..17785050 (25 bp)
GAGCGCAACATAGCCGCGAGGGTCC
LOC_Os09g29300
OsAffx.6438.1.S1_at--280--2491Chr09:17785020..17785044 (25 bp)
AACATAGCCGCGAGGGTCCACGAAA
LOC_Os09g29300
OsAffx.6438.1.S1_at--477--291Chr09:17785017..17785041 (25 bp)
ATAGCCGCGAGGGTCCACGAAATGG
LOC_Os09g29300
OsAffx.6438.1.S1_at--798--7631Chr09:17784777..17784801 (25 bp)
GGGAGCATGTCTGTCCGCGTCCTCA
LOC_Os09g29300
Target Sequence 
CGGCCACGTGGGTCAGGTTCTCCGCGCGCCTCCTCGAGCTTCTCCTCCTCCTCCCCGACTCCTCCCACGACGCCGCCGAC
GCCGACTACCTCATCGCCCTTCCCAACCCGCACGTCATCGCCGAGCTATCCGCCTACGCGTCCGTCGCCGACGCCGTCCG
CCAGGCCCCGCCACCTTCCTCCGCCCCGCAGCACAACGGCCTCATCTGGGAGCTCATCCGGCTCGCCGAAGAAGACCGCG
TCGCGGCGGAGCGCAACATAGCCGCGAGGGTCCACGAAATGGGGGAGCGCCTCGCCACCCTCACCCTGGCCGACGCGGTG
GAGCTGGTCTGCGTGCTGAGGCAGGTGGAGGAGAGCACGTCGTCGCCGGCGGACTGGAAGTGGGCGGGGCTGGACGAGGC
CGTCGTCGGCGAGGCGCGGCGGCTGCGCGAGCGCGCCGAGGAGGTGGTGCTGCGCAGGACAGAGCAGGAGAGGCGGCTCG
TGCGGAGGGGCACCGCCGGGAGCATGTCTGTCCGCGTCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis