Browse Element(s) Details


OsAffx.24218.1.S1_at

Description tigr:9630.m01176
TID=OsAffx.24218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1288011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed
LOC_Os02g12919NANA2+6822933..6823169NA
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24218.1.S1_at--1028--3891Chr02:6799314..6799592 (25 bp)
CTGGGCATGGCGGTTCGATGATCAT
LOC_Os02g12880
OsAffx.24218.1.S1_at--557--5091Chr02:6800355..6800379 (25 bp)
GCACTTTAATGCTTCGGATATGGAC
LOC_Os02g12880
OsAffx.24218.1.S1_at--731--5751Chr02:6800377..6800401 (25 bp)
GACGGTGATGGCTTCCTAAATCTGA
LOC_Os02g12880
OsAffx.24218.1.S1_at--206--6831Chr02:6800406..6800514 (25 bp)
GTTTAACGACTTCTTACATCCAGCC
LOC_Os02g12880
OsAffx.24218.1.S1_at--757--1451Chr02:6800553..6800577 (25 bp)
AGAAGAAGTCAGGTGCATCTTTCCC
LOC_Os02g12880
OsAffx.24218.1.S1_at--41--2091Chr02:6800583..6800607 (25 bp)
ACATTATTTCCTTACACATCTGCAA
LOC_Os02g12880
OsAffx.24218.1.S1_at--1052--10211Chr02:6800613..6800637 (25 bp)
TATTCCATTTGTATCCTCCTCTTAT
LOC_Os02g12880
OsAffx.24218.1.S1_at--815--10471Chr02:6800759..6800783 (25 bp)
TTACTTGCTGAAACAATGCCCTTGA
LOC_Os02g12880
OsAffx.24218.1.S1_at--951--1111Chr02:6800787..6800811 (25 bp)
AGTGATGCTACATTCTGGCTTGTGC
LOC_Os02g12880
OsAffx.24218.1.S1_at--863--8491Chr02:6800802..6800826 (25 bp)
TGGCTTGTGCATCACTATGTTGTGC
LOC_Os02g12880
OsAffx.24218.1.S1_at--1125--8511Chr02:6800839..6800863 (25 bp)
TGGAGCATTTCTTACTTTTCTTACT
LOC_Os02g12880
Target Sequence 
CTGGGCATGGCGGTTCGATGATCATAACTCATCCAATGATGGGGTGGGATGGTGGAAGGAGGAGCACTTTAATGCTTCGG
ATATGGACGGTGATGGCTTCCTAAATCTGATAGAGTTTAACGACTTCTTACATCCAGCCGATACTACGAACCCAAAGCTA
ATAAATTGGTTGTGCAAAGAAGAAGTCAGGTGCATCTTTCCCTCCAAACATTATTTCCTTACACATCTGCAAGTTCATAT
TCCATTTGTATCCTCCTCTTATTATAATTCAGTTCCGCACAAACAAAATGGAGATGAAAGATATTTTTTTTCTTGCTGAA
CTTAGAGAGTTAGAAACTACAAAAAAGAACAATTATGAAACTCTAGAACATATTCTTAGGTTATTACTTGCTGAAACAAT
GCCCTTGATGGAGTGATGCTACATTCTGGCTTGTGCATCACTATGTTGTGCAATGGTTATAATTGGAGCATTTCTTACTT
TTCTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis