Browse Element(s) Details


Os.9096.2.S1_a_at

Description gb:CB666714
DB_XREF= gi:29670439
DB_XREF=OSJNEd13L13.r
CLONE=OSJNEd13L13
TID=Os.9096.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9096 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568202.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1288011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed
LOC_Os02g12919NANA2+6822933..6823169NA
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9096.2.S1_a_at--947--6251Chr02:6801460..6801480 (21 bp)
GATGGGCTTTTGTCAGCAGATGAGC
LOC_Os02g12880
Os.9096.2.S1_a_at--523--4351Chr02:6801510..6801534 (25 bp)
CCAGAACACTTCTATGCCAAGCAAC
LOC_Os02g12880
Os.9096.2.S1_a_at--429--5451Chr02:6801862..6801886 (25 bp)
GAACCCATATGTATTCTACAGTGCT
LOC_Os02g12880
Os.9096.2.S1_a_at--1120--6271Chr02:6801917..6801941 (25 bp)
GATGAGCTTCGGTAGTTCCTGGATG
LOC_Os02g12880
Os.9096.2.S1_a_at--620--8211Chr02:6802046..6802070 (25 bp)
GGAATCACCCACCTATGGAACACTT
LOC_Os02g12880
Os.9096.2.S1_a_at--195--8171Chr02:6802062..6802086 (25 bp)
GGAACACTTCATTAGACATCGATGT
LOC_Os02g12880
Os.9096.2.S1_a_at--451--6471Chr02:6802092..6802116 (25 bp)
GATAACTCCCATCATCTGTAGGTTT
LOC_Os02g12880
Os.9096.2.S1_a_at--147--10091Chr02:6802110..6802134 (25 bp)
TAGGTTTCACCTATGGGCTGCAAGA
LOC_Os02g12880
Os.9096.2.S1_a_at--389--6591Chr02:6802242..6802266 (25 bp)
GATTCCATGTATAACACGAGCGTGT
LOC_Os02g12880
Os.9096.2.S1_a_at--295--5891Chr02:6802259..6802283 (25 bp)
GAGCGTGTTTCATGTACACAGTTCT
LOC_Os02g12880
Os.9096.2.S1_a_at--589--5471Chr02:6802390..6802414 (25 bp)
GAACTATATTTTTGGATCACACACT
LOC_Os02g12880
Target Sequence 
GATGGGCTTTTGTCAGCAGATGAGCTAAAACCTATTATTGGAAATCTCCNACCCACCAGAACACTTCTATGCCAAGCAAC
AAGCTGACTATGTGATAACACAGGCTGACACAAACAAAGATGGGCAACTGAGTTTGCAAGAGATGATTGAGAACCCATAT
GTATTCTACAGTGCTTTATTCNCAGAAGATGATTATGGGTTTCATGATGAGCTTCGGTAGTTCCTGGATGNAGGTACTCA
GGAATCACCCACCTATGGAACACTTCATTAGACATCGATGTGAATAGATAACTCCCATCATCTGTAGGTTTCACCTATGG
GCTGCAAGAACATTCGAGGGTGATTCCATGTATAACACGAGCGTGTTTCATGTACACAGTTCTATAAGTAGGGCGTTCTT
TTGTAACCTTAACCTTTCTTGATTTATTTTCTTCATATGTATGATGAGGTAGCATTGGTTCTTTTATTTTTTTTTATTAT
TGCAAAGTAGAACTATATTTTTGGATCACACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9096.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis