Browse Element(s) Details


Os.57132.1.S1_at

Description gb:AK110984.1
DB_XREF= gi:32996193
TID=Os.57132.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C12, full insert sequence.
FL= gb:AK110984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1290011/11Cysteine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed
LOC_Os02g12919NANA2+6822933..6823169NA
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein
LOC_Os02g12940NANA2+6831702..6834761Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57132.1.S1_at--243--1611Chr02:6813294..6813318 (25 bp)
AGCTGCATCTGGTTCAGGAGGCACA
LOC_Os02g12900
Os.57132.1.S1_at--157--10111Chr02:6813371..6813395 (25 bp)
TATGTGTTGAACCAGCTGAAAGTGC
LOC_Os02g12900
Os.57132.1.S1_at--299--5431Chr02:6813515..6813539 (25 bp)
GAACCAGCATTCCATAACATCCAAG
LOC_Os02g12900
Os.57132.1.S1_at--277--8291Chr02:6813539..6813563 (25 bp)
GGCATAGGTCCAGGATTTATCCCAG
LOC_Os02g12900
Os.57132.1.S1_at--699--2491Chr02:6813598..6813622 (25 bp)
AACAGTGACCACTCAAGAAGCTATG
LOC_Os02g12900
Os.57132.1.S1_at--6--2611Chr02:6813683..6813704 (22 bp)
AACGCAGCTGCCATCTTGAAGGTTG
LOC_Os02g12900
Os.57132.1.S1_at--1005--6011Chr02:6813868..6813892 (25 bp)
GAGAGATACCTGAATTCGGAGCTAT
LOC_Os02g12900
Os.57132.1.S1_at--519--3151Chr02:6813880..6813904 (25 bp)
AATTCGGAGCTATTTGCGCAGGTGA
LOC_Os02g12900
Os.57132.1.S1_at--1112--2211Chr02:6813926..6813950 (25 bp)
ACAAGGCATTCTGCTGACATGTGTA
LOC_Os02g12900
Os.57132.1.S1_at--191--3531Chr02:6813959..6813983 (25 bp)
CATGCAGTGTAATCTTCAAGGCTTC
LOC_Os02g12900
Os.57132.1.S1_at--746--10551Chr02:6813985..6814009 (25 bp)
TTCTTGGTGGTTGTTCTACTCTAAT
LOC_Os02g12900
Target Sequence 
AGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATAT
GTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTT
ATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAG
GTTGGCAAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCAAGGG
AGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAG
GTGAAGGAGGAATGCATCAACATCAACAAGGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGC
TTCATTCTTGGTGGTTGTTCTACTCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis