Browse Element(s) Details


Os.9386.2.S1_x_at

Description gb:AK120313.1
DB_XREF= gi:37989936
TID=Os.9386.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055L11, full insert sequence.
FL= gb:AK120313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1285011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9386.2.S1_x_at--706--6691Chr02:6784728..6784752 (25 bp)
GTTCCAGCAGGTACCATCCATATGG
LOC_Os02g12850
Os.9386.2.S1_x_at--420--6471Chr02:6784671..6784695 (25 bp)
GATACAATAAGTGCACCTCCTGGAA
LOC_Os02g12850
Os.9386.2.S1_x_at--534--371Chr02:6784645..6784669 (25 bp)
ATCAGCGTTTTATCTTGGGTTACTC
LOC_Os02g12850
Os.9386.2.S1_x_at--1097--10831Chr02:6784631..6784655 (25 bp)
TTGGGTTACTCAATCAGCGGCACCA
LOC_Os02g12850
Os.9386.2.S1_x_at--621--3391Chr02:6784617..6784641 (25 bp)
CAGCGGCACCAGAACATTTATTTAG
LOC_Os02g12850
Os.9386.2.S1_x_at--1137--131Chr02:6784583..6784607 (25 bp)
ATTATCTCGTAACTGGACCAACTGT
LOC_Os02g12850
Os.9386.2.S1_x_at--799--7431Chr02:6784560..6784584 (25 bp)
GTGTAATTTTAGTCGCTGAACCCAT
LOC_Os02g12850
Os.9386.2.S1_x_at--5--5451Chr02:6784543..6784567 (25 bp)
GAACCCATCCGTAGTCTGCTGTAGA
LOC_Os02g12850
Os.9386.2.S1_x_at--573--10251Chr02:6784402..6784426 (25 bp)
TTTGTGCGGTAGTGACATTGCCTTC
LOC_Os02g12850
Os.9386.2.S1_x_at--1101--71Chr02:6784386..6784410 (25 bp)
ATTGCCTTCGCAAGCAGCTAACTGT
LOC_Os02g12850
Os.9386.2.S1_x_at--348--9811Chr02:6784368..6784392 (25 bp)
TAACTGTTGCCATCTGCCCTTATAT
LOC_Os02g12850
Target Sequence 
GTTCCAGCAGGTACCATCCATATGGGAAATGAGTGAACTCATGAGAGTTTTTTCTAGGATACAATAAGTGCACCTCCTGG
AAAATCAGCGTTTTATCTTGGGTTACTCAATCAGCGGCACCAGAACATTTATTTAGTTTCATCNAATTATCTCGTAACTG
GACCAACTGTGTAATTTTAGTCGCTGAACCCATCCGTAGTCTGCTGTAGAAGCTACACATGAAAGCTATGTTGTATTCCG
TTAGTTTTCATATGCTGAGAGAATTAGAACCCTCAAACAAAGCCTTTTGTGTTAGGAACAGTATTGGTATGATTGACCTA
TTATATTTTGTGCGGTAGTGACATTGCCTTCGCAAGCAGCTAACTGTTGCCATCTGCCCTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9386.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis